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Os11g0545700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Centromere/kinetochore protein zw10 homolog.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.7 (0.00937) R2 : 0.0898
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.132 (0.0197) R2dN8 : 0.116 R2N8 : 0.0898
σ : 0.177
deviance : 14.3
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
12.48 0.166 10.7 0.454 0.118 -0.304 -0.00814 2.07 0.217 4.9 26.78 1162 -- --
13.4 0.172 10.7 -0.00917 0.102 -0.095 -0.0347 -- 0.129 6.44 26.78 1162 -- --
12.48 0.165 10.7 0.45 0.117 -0.305 -- 2.08 0.215 4.9 26.88 1152 -- --
13.24 0.169 10.7 0.00311 0.11 -0.095 -- -- 0.128 5.22 26.5 969 -- --
13.18 0.169 10.7 0.483 -- -0.321 -- 2.3 0.217 -- 27.1 1129 -- --
13.53 0.172 10.7 -0.0217 0.121 -- -0.00139 -- 0.127 5.73 -- -- -- --
13.53 0.172 10.7 -0.0217 0.121 -- -- -- 0.127 5.73 -- -- -- --
13.42 0.171 10.7 0.00374 -- -0.192 -- -- 0.131 -- 26.82 272 -- --
13.24 0.169 10.7 -- 0.112 -0.102 -- -- 0.129 4.96 26.6 963 -- --
14.29 0.177 10.7 -0.0179 -- -- -- -- 0.13 -- -- -- -- --
13.54 0.172 10.7 -- 0.121 -- -- -- 0.13 5.73 -- -- -- --
13.42 0.171 10.7 -- -- -0.188 -- -- 0.131 -- 26.7 272 -- --
14.3 0.177 10.7 -- -- -- -- -- 0.132 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 12.30 radiation 10.0 10 < th dose dependent rect. 24 11
2 12.31 wind 1.0 270 > th dose independent rect. 23 18
8 12.34 radiation 1.0 30 < th dose dependent rect. 5 19
10 12.37 temperature 25.0 1440 > th dose dependent rect. 16 9
13 12.38 radiation 10.0 10 < th dose dependent sin 5 NA
18 12.38 radiation 10.0 10 < th dose dependent rect. 24 17
19 12.39 humidity 50.0 270 > th dose independent rect. 15 8
26 12.39 radiation 1.0 30 < th dose dependent rect. 7 17
30 12.41 temperature 25.0 1440 > th dose dependent sin 14 NA
39 12.42 temperature 25.0 1440 > th dose dependent rect. 17 1
41 12.42 radiation 1.0 30 < th dose dependent rect. 15 9
42 12.42 temperature 25.0 1440 > th dose dependent rect. 14 10
68 12.42 wind 9.0 90 < th dose dependent rect. 5 19
69 12.43 atmosphere 1005.0 90 > th dose independent rect. 24 5
71 12.43 temperature 25.0 1440 > th dose dependent rect. 14 8
79 12.44 humidity 50.0 90 > th dose independent rect. 5 19
83 12.44 radiation 1.0 30 < th dose dependent rect. 17 7
84 12.44 radiation 10.0 10 < th dose dependent rect. 24 7
100 12.45 wind 7.0 90 < th dose independent rect. 5 19
106 12.45 humidity 50.0 10 > th dose dependent rect. 17 7
122 12.46 radiation 1.0 30 < th dose independent rect. 5 19
123 12.46 wind 3.0 4320 > th dose dependent rect. 8 2
126 12.46 radiation 10.0 14400 < th dose dependent rect. 19 6
127 12.46 humidity 50.0 90 > th dose dependent rect. 17 7
138 12.47 temperature 25.0 1440 < th dose independent rect. 20 2
141 12.47 humidity 50.0 270 > th dose independent rect. 3 20
143 12.47 temperature 25.0 1440 > th dose dependent rect. 20 1
145 12.47 atmosphere 1000.0 90 > th dose dependent rect. 24 5
155 12.48 radiation 1.0 30 < th dose independent rect. 7 17
168 12.49 atmosphere 1005.0 270 > th dose independent rect. 24 2
169 12.49 temperature 25.0 1440 < th dose independent rect. 20 4
171 12.49 atmosphere 1010.0 10 < th dose independent rect. 5 7
181 12.50 temperature 25.0 1440 > th dose independent rect. 20 2
184 12.50 temperature 25.0 1440 < th dose independent rect. 18 7
186 12.50 atmosphere 1000.0 270 > th dose dependent rect. 24 3
194 12.50 humidity 50.0 10 > th dose dependent rect. 14 10
214 12.50 humidity 50.0 90 > th dose dependent rect. 5 19
247 12.52 wind 1.0 270 > th dose independent rect. 23 4
250 12.52 radiation 1.0 30 < th dose independent rect. 15 9
267 12.52 wind 9.0 90 < th dose dependent rect. 5 10
278 12.53 radiation 1.0 30 < th dose independent rect. 17 7
287 12.53 wind 9.0 270 < th dose dependent rect. 3 9
294 12.54 radiation 20.0 14400 < th dose independent rect. 1 5
296 12.54 humidity 70.0 10 > th dose independent rect. 18 6
299 12.54 wind 7.0 270 < th dose independent rect. 3 10
307 12.54 temperature 25.0 1440 > th dose dependent rect. 14 1
318 12.54 temperature 20.0 10 > th dose dependent rect. 16 13
323 12.55 precipitation 0.1 90 < th dose independent rect. 24 5
341 12.55 precipitation 0.1 90 < th dose dependent rect. 24 5
344 12.55 wind 9.0 90 < th dose dependent rect. 5 8
353 12.56 wind 5.0 4320 > th dose independent rect. 9 1
356 12.56 wind 5.0 90 < th dose independent rect. 24 5
360 12.56 wind 5.0 90 < th dose independent rect. 5 8
364 12.56 wind 1.0 270 > th dose independent rect. 11 16
367 12.56 temperature 25.0 10 > th dose dependent rect. 17 1
377 12.56 temperature 20.0 30 > th dose dependent rect. 12 17
381 12.56 radiation 1.0 270 < th dose dependent rect. 3 21
382 12.57 wind 5.0 4320 < th dose independent rect. 8 2
386 12.57 wind 1.0 270 > th dose independent rect. 22 7
415 12.58 temperature 10.0 90 > th dose independent rect. 24 5
417 12.58 temperature 30.0 90 < th dose independent rect. 24 5
418 12.58 humidity 50.0 90 > th dose independent rect. 24 5
421 12.58 atmosphere 995.0 90 > th dose independent rect. 24 5
422 12.58 atmosphere 1010.0 90 < th dose independent rect. 24 5
424 12.58 radiation 1.0 90 < th dose independent rect. 24 5
434 12.58 temperature 10.0 90 > th dose independent rect. 5 19
438 12.58 temperature 10.0 90 > th dose dependent rect. 24 5
441 12.58 radiation 1.0 90 < th dose dependent rect. 24 5
482 12.59 wind 9.0 270 < th dose independent rect. 3 20
497 12.60 wind 1.0 720 < th dose independent rect. 13 1
502 12.60 temperature 30.0 10 < th dose independent rect. 18 6
509 12.60 wind 5.0 90 < th dose independent rect. 5 10
519 12.60 atmosphere 995.0 10 > th dose independent rect. 24 18
524 12.60 radiation 1.0 270 < th dose independent rect. 3 21
623 12.62 radiation 10.0 10 < th dose independent rect. 24 18
624 12.62 precipitation 0.1 10 < th dose independent rect. 24 18
627 12.62 wind 9.0 270 < th dose independent rect. 2 22
633 12.62 wind 9.0 90 < th dose dependent rect. 24 5
659 12.62 temperature 10.0 30 > th dose dependent rect. 12 17
663 12.62 precipitation 0.1 10 < th dose dependent rect. 24 18
666 12.62 wind 9.0 270 < th dose dependent rect. 3 20
698 12.63 radiation 30.0 90 < th dose independent rect. 12 17
704 12.63 temperature 10.0 270 > th dose independent rect. 3 20
716 12.63 radiation 1.0 1440 < th dose dependent rect. 19 6
730 12.63 humidity 90.0 90 > th dose dependent rect. 5 20
749 12.64 temperature 10.0 1440 > th dose independent rect. 19 6
757 12.64 humidity 50.0 1440 > th dose independent rect. 19 6
759 12.64 atmosphere 995.0 1440 > th dose independent rect. 19 6
761 12.64 radiation 1.0 1440 < th dose independent rect. 19 6
794 12.64 precipitation 0.1 270 < th dose independent rect. 13 14
798 12.64 temperature 10.0 1440 > th dose independent rect. 1 18
801 12.64 atmosphere 1015.0 10 < th dose independent rect. 24 18
805 12.64 atmosphere 1010.0 10 < th dose independent rect. 5 19
810 12.64 temperature 20.0 270 > th dose dependent rect. 24 2
845 12.64 precipitation 0.1 270 < th dose dependent rect. 13 14
852 12.65 temperature 25.0 1440 < th dose independent sin 14 NA
857 12.65 wind 9.0 30 < th dose independent rect. 18 6
858 12.65 temperature 10.0 10 > th dose independent rect. 18 6
862 12.65 atmosphere 995.0 30 > th dose independent rect. 18 6
864 12.65 radiation 20.0 10 < th dose independent rect. 18 6
876 12.65 wind 1.0 270 > th dose independent rect. 9 9
877 12.65 humidity 70.0 30 > th dose independent rect. 15 9
883 12.65 temperature 10.0 10 > th dose independent rect. 24 18
895 12.65 wind 1.0 270 < th dose dependent rect. 22 1
896 12.65 temperature 10.0 270 > th dose dependent rect. 24 2
930 12.66 humidity 90.0 1440 < th dose independent rect. 20 1
935 12.66 temperature 10.0 270 > th dose independent rect. 24 2
937 12.66 temperature 30.0 270 < th dose independent rect. 24 2
938 12.66 humidity 50.0 270 > th dose independent rect. 24 2
941 12.66 atmosphere 995.0 270 > th dose independent rect. 24 2
942 12.66 atmosphere 1010.0 270 < th dose independent rect. 24 2
944 12.66 radiation 1.0 270 < th dose independent rect. 24 2
949 12.66 precipitation 0.1 270 < th dose independent rect. 24 2
955 12.66 humidity 90.0 1440 > th dose independent rect. 20 3
976 12.66 precipitation 0.1 10 < th dose independent rect. 18 6