Os11g0544100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os11g0544100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 49.52 | 0.331 | 10.5 | 1.49 | 1.47 | 0.342 | -1.16 | -1.28 | 0.216 | 20.2 | 24.06 | 117 | -- | -- |
| 53.2 | 0.34 | 10.5 | 1.53 | 1.5 | 0.368 | -0.715 | -- | 0.241 | 20 | 37.31 | 66 | -- | -- |
| 53.02 | 0.339 | 10.5 | 1.53 | 1.47 | 0.371 | -- | -0.936 | 0.222 | 20.3 | 24.81 | 132 | -- | -- |
| 54.71 | 0.344 | 10.5 | 1.53 | 1.47 | 0.472 | -- | -- | 0.241 | 20 | 39.39 | 61 | -- | -- |
| 70.41 | 0.391 | 10.5 | 1.4 | -- | 1.93 | -- | -1.81 | 0.142 | -- | 2.43 | 912 | -- | -- |
| 57.41 | 0.355 | 10.5 | 1.5 | 1.43 | -- | -0.88 | -- | 0.249 | 19.6 | -- | -- | -- | -- |
| 59.56 | 0.361 | 10.5 | 1.52 | 1.43 | -- | -- | -- | 0.247 | 19.7 | -- | -- | -- | -- |
| 75.03 | 0.403 | 10.5 | 1.39 | -- | 1.98 | -- | -- | 0.129 | -- | 1.853 | 924 | -- | -- |
| 116.49 | 0.505 | 10.6 | -- | 1.46 | 0.332 | -- | -- | 0.0642 | 20.1 | 33.18 | 177 | -- | -- |
| 169.96 | 0.609 | 10.5 | 1.5 | -- | -- | -- | -- | 0.227 | -- | -- | -- | -- | -- |
| 120.65 | 0.514 | 10.6 | -- | 1.42 | -- | -- | -- | 0.0779 | 19.8 | -- | -- | -- | -- |
| 122.68 | 0.516 | 10.5 | -- | -- | 2.14 | -- | -- | 0.00665 | -- | 0.05 | 935 | -- | -- |
| 229.62 | 0.707 | 10.5 | -- | -- | -- | -- | -- | 0.0599 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 40.74 | humidity | 90.0 | 270 | < th | dose independent | rect. | 8 | 6 |
| 6 | 42.37 | temperature | 15.0 | 270 | > th | dose independent | rect. | 8 | 7 |
| 20 | 43.60 | humidity | 90.0 | 270 | < th | dose dependent | rect. | 8 | 5 |
| 22 | 43.88 | humidity | 90.0 | 270 | < th | dose independent | rect. | 11 | 1 |
| 24 | 43.95 | humidity | 90.0 | 10 | < th | dose independent | rect. | 11 | 5 |
| 25 | 44.06 | temperature | 15.0 | 270 | > th | dose independent | rect. | 22 | 15 |
| 30 | 44.19 | wind | 7.0 | 270 | < th | dose independent | rect. | 8 | 6 |
| 39 | 44.39 | radiation | 1.0 | 270 | > th | dose independent | rect. | 8 | 6 |
| 46 | 44.52 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 9 | 7 |
| 50 | 44.60 | radiation | 40.0 | 90 | < th | dose independent | rect. | 3 | 8 |
| 60 | 44.94 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 11 | 5 |
| 66 | 45.04 | wind | 7.0 | 10 | < th | dose independent | rect. | 11 | 5 |
| 67 | 45.05 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 2 | 8 |
| 73 | 45.14 | humidity | 90.0 | 270 | < th | dose dependent | rect. | 11 | 1 |
| 80 | 45.19 | radiation | 40.0 | 270 | < th | dose independent | rect. | 1 | 9 |
| 97 | 45.31 | humidity | 80.0 | 270 | > th | dose independent | rect. | 3 | 8 |
| 106 | 45.37 | wind | 7.0 | 270 | < th | dose independent | rect. | 22 | 15 |
| 126 | 45.51 | wind | 7.0 | 270 | < th | dose independent | rect. | 11 | 1 |
| 134 | 45.57 | wind | 9.0 | 270 | < th | dose dependent | rect. | 8 | 6 |
| 136 | 45.59 | wind | 9.0 | 10 | < th | dose dependent | rect. | 11 | 5 |
| 137 | 45.60 | temperature | 15.0 | 90 | > th | dose independent | rect. | 10 | 17 |
| 152 | 45.69 | humidity | 60.0 | 90 | > th | dose independent | rect. | 3 | 8 |
| 178 | 45.89 | radiation | 40.0 | 90 | < th | dose independent | rect. | 16 | 19 |
| 181 | 45.89 | humidity | 90.0 | 270 | < th | dose dependent | rect. | 23 | 14 |
| 199 | 45.96 | radiation | 30.0 | 270 | < th | dose independent | rect. | 15 | 17 |
| 210 | 46.03 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 17 |
| 211 | 46.03 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 15 | 17 |
| 214 | 46.03 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 17 |
| 215 | 46.03 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 15 | 17 |
| 222 | 46.07 | wind | 7.0 | 270 | < th | dose independent | rect. | 15 | 17 |
| 226 | 46.09 | temperature | 20.0 | 10 | > th | dose independent | rect. | 11 | 5 |
| 240 | 46.15 | temperature | 15.0 | 270 | > th | dose independent | rect. | 8 | 18 |
| 243 | 46.18 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 8 | 7 |
| 245 | 46.18 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 8 | 7 |
| 263 | 46.24 | wind | 9.0 | 270 | < th | dose dependent | rect. | 11 | 1 |
| 265 | 46.25 | atmosphere | 1010.0 | 10 | < th | dose independent | rect. | 11 | 5 |
| 274 | 46.29 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 8 | 7 |
| 276 | 46.29 | temperature | 10.0 | 270 | > th | dose independent | rect. | 15 | 17 |
| 284 | 46.31 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 8 | 7 |
| 293 | 46.33 | wind | 9.0 | 270 | < th | dose dependent | rect. | 9 | 4 |
| 297 | 46.35 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 5 |
| 299 | 46.35 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 5 |
| 308 | 46.38 | humidity | 60.0 | 270 | > th | dose dependent | rect. | 3 | 7 |
| 314 | 46.41 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 8 | 5 |
| 324 | 46.46 | temperature | 10.0 | 270 | > th | dose independent | rect. | 20 | 7 |
| 325 | 46.46 | temperature | 30.0 | 270 | < th | dose independent | rect. | 20 | 7 |
| 326 | 46.46 | humidity | 50.0 | 270 | > th | dose independent | rect. | 20 | 7 |
| 329 | 46.46 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 20 | 7 |
| 330 | 46.46 | radiation | 1.0 | 270 | < th | dose independent | rect. | 20 | 7 |
| 336 | 46.46 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 17 |
| 337 | 46.46 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 17 |
| 339 | 46.46 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 20 | 7 |
| 348 | 46.47 | wind | 9.0 | 270 | < th | dose independent | rect. | 20 | 7 |
| 364 | 46.51 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 20 | 7 |
| 366 | 46.51 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 20 | 7 |
| 413 | 46.61 | radiation | 1.0 | 90 | < th | dose dependent | sin | 11 | NA |
| 425 | 46.63 | radiation | 1.0 | 90 | < th | dose independent | sin | 11 | NA |
| 426 | 46.63 | wind | 7.0 | 270 | < th | dose independent | rect. | 3 | 5 |
| 428 | 46.63 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 8 | 19 |
| 433 | 46.64 | wind | 9.0 | 270 | < th | dose independent | rect. | 8 | 19 |
| 438 | 46.66 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 8 | 19 |
| 439 | 46.66 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 8 | 19 |
| 450 | 46.69 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 19 | 8 |
| 472 | 46.74 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 5 |
| 474 | 46.74 | temperature | 30.0 | 270 | < th | dose independent | rect. | 3 | 5 |
| 475 | 46.74 | humidity | 50.0 | 270 | > th | dose independent | rect. | 3 | 5 |
| 477 | 46.74 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 5 |
| 478 | 46.74 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 5 |
| 490 | 46.76 | wind | 9.0 | 270 | < th | dose independent | rect. | 13 | 9 |
| 501 | 46.78 | wind | 7.0 | 10 | < th | dose independent | rect. | 11 | 3 |
| 515 | 46.80 | wind | 1.0 | 270 | > th | dose independent | rect. | 13 | 9 |
| 517 | 46.80 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 14 | 7 |
| 520 | 46.81 | wind | 9.0 | 270 | < th | dose independent | rect. | 3 | 17 |
| 529 | 46.84 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 13 | 9 |
| 531 | 46.85 | wind | 1.0 | 270 | > th | dose independent | rect. | 8 | 6 |
| 557 | 46.87 | radiation | 40.0 | 90 | < th | dose independent | rect. | 3 | 20 |
| 578 | 46.91 | temperature | 10.0 | 270 | > th | dose independent | rect. | 13 | 9 |
| 581 | 46.91 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 22 | 15 |
| 587 | 46.93 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 14 | 18 |
| 604 | 46.97 | radiation | 1.0 | 90 | > th | dose independent | sin | 11 | NA |
| 624 | 47.00 | radiation | 40.0 | 90 | < th | dose independent | rect. | 5 | 17 |
| 637 | 47.04 | humidity | 50.0 | 270 | > th | dose independent | rect. | 8 | 6 |
| 646 | 47.05 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 9 | 16 |
| 648 | 47.05 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 9 | 16 |
| 664 | 47.10 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 13 | 9 |
| 668 | 47.10 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 13 | 9 |
| 670 | 47.11 | radiation | 40.0 | 270 | < th | dose independent | rect. | 3 | 16 |
| 686 | 47.13 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 11 | 1 |
| 692 | 47.14 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 13 | 9 |
| 698 | 47.17 | radiation | 20.0 | 30 | > th | dose independent | rect. | 11 | 1 |
| 713 | 47.19 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 15 | 17 |
| 727 | 47.22 | wind | 9.0 | 270 | < th | dose dependent | rect. | 3 | 5 |
| 733 | 47.24 | humidity | 50.0 | 270 | > th | dose independent | rect. | 8 | 19 |
| 780 | 47.30 | radiation | 1.0 | 270 | < th | dose dependent | sin | 13 | NA |
| 783 | 47.31 | temperature | 30.0 | 270 | < th | dose independent | rect. | 8 | 7 |
| 802 | 47.34 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 15 | 17 |
| 831 | 47.39 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 20 | 7 |
| 836 | 47.40 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 22 | 15 |
| 841 | 47.40 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 22 | 15 |
| 935 | 47.53 | radiation | 20.0 | 30 | > th | dose independent | rect. | 11 | 3 |
| 938 | 47.53 | temperature | 30.0 | 270 | < th | dose independent | rect. | 8 | 19 |
| 944 | 47.54 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 2 | 6 |
| 984 | 47.58 | radiation | 20.0 | 30 | > th | dose independent | rect. | 11 | 5 |
| 990 | 47.59 | humidity | 50.0 | 270 | > th | dose independent | rect. | 22 | 15 |