Os11g0543600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os11g0543600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 53.84 | 0.345 | 9.02 | 1.17 | 1.32 | 0.717 | -0.0662 | -0.637 | -0.228 | 19.9 | 24.4 | 763 | -- | -- |
| 53.76 | 0.341 | 9.03 | 1.16 | 1.29 | 0.774 | 0.0789 | -- | -0.212 | 19.8 | 24 | 2232 | -- | -- |
| 53.85 | 0.342 | 9.02 | 1.16 | 1.32 | 0.718 | -- | -0.608 | -0.23 | 19.9 | 24.36 | 765 | -- | -- |
| 53.78 | 0.342 | 9.03 | 1.14 | 1.28 | 0.751 | -- | -- | -0.221 | 19.8 | 24.09 | 2235 | -- | -- |
| 134.97 | 0.544 | 9.01 | 0.999 | -- | 0.877 | -- | 0.176 | -0.28 | -- | 24.36 | 765 | -- | -- |
| 63.33 | 0.373 | 9.07 | 0.849 | 1.25 | -- | 0.0908 | -- | -0.403 | 19.7 | -- | -- | -- | -- |
| 63.35 | 0.373 | 9.07 | 0.846 | 1.25 | -- | -- | -- | -0.403 | 19.7 | -- | -- | -- | -- |
| 134.48 | 0.542 | 9.01 | 1.03 | -- | 0.895 | -- | -- | -0.279 | -- | 24.09 | 2235 | -- | -- |
| 79.81 | 0.418 | 9.08 | -- | 1.23 | 0.395 | -- | -- | -0.443 | 19.5 | 24.09 | 2235 | -- | -- |
| 147.28 | 0.567 | 9.04 | 0.83 | -- | -- | -- | -- | -0.422 | -- | -- | -- | -- | -- |
| 82.23 | 0.424 | 9.09 | -- | 1.24 | -- | -- | -- | -0.498 | 19.7 | -- | -- | -- | -- |
| 158 | 0.585 | 9.09 | -- | -- | -0.439 | -- | -- | -0.645 | -- | 48.51 | 47520 | -- | -- |
| 165.44 | 0.6 | 9.06 | -- | -- | -- | -- | -- | -0.514 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 51.52 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 10 |
| 2 | 51.53 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 10 |
| 4 | 51.61 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 11 |
| 7 | 51.65 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 6 |
| 12 | 51.72 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 6 |
| 19 | 51.77 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 7 |
| 36 | 52.21 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 18 | 3 |
| 37 | 52.23 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 18 | 7 |
| 40 | 52.24 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 20 | 8 |
| 49 | 52.31 | wind | 5.0 | 43200 | > th | dose independent | sin | 13 | NA |
| 57 | 52.36 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 20 | 5 |
| 63 | 52.39 | wind | 5.0 | 43200 | < th | dose independent | sin | 13 | NA |
| 69 | 52.40 | wind | 7.0 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 74 | 52.42 | wind | 5.0 | 43200 | > th | dose independent | rect. | 16 | 15 |
| 76 | 52.43 | wind | 5.0 | 43200 | > th | dose independent | rect. | 18 | 7 |
| 80 | 52.44 | wind | 5.0 | 43200 | > th | dose independent | rect. | 16 | 13 |
| 89 | 52.47 | wind | 5.0 | 43200 | > th | dose independent | rect. | 17 | 10 |
| 92 | 52.49 | wind | 5.0 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 108 | 52.54 | wind | 5.0 | 43200 | < th | dose independent | rect. | 17 | 10 |
| 109 | 52.54 | wind | 5.0 | 43200 | < th | dose independent | rect. | 16 | 13 |
| 116 | 52.55 | wind | 5.0 | 43200 | < th | dose independent | rect. | 16 | 15 |
| 117 | 52.55 | wind | 5.0 | 43200 | < th | dose independent | rect. | 15 | 18 |
| 127 | 52.57 | wind | 5.0 | 43200 | > th | dose dependent | sin | 13 | NA |
| 158 | 52.63 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 15 | 18 |
| 164 | 52.64 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 16 | 16 |
| 248 | 52.81 | wind | 7.0 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 250 | 52.81 | wind | 5.0 | 43200 | > th | dose independent | rect. | 6 | 23 |
| 264 | 52.84 | wind | 5.0 | 43200 | > th | dose independent | rect. | 4 | 23 |
| 265 | 52.84 | wind | 5.0 | 43200 | < th | dose independent | rect. | 6 | 23 |
| 268 | 52.85 | wind | 5.0 | 43200 | > th | dose independent | no | NA | NA |
| 275 | 52.85 | wind | 5.0 | 43200 | > th | dose independent | rect. | 2 | 23 |
| 276 | 52.85 | wind | 5.0 | 43200 | > th | dose independent | rect. | 18 | 23 |
| 283 | 52.86 | wind | 5.0 | 43200 | > th | dose independent | rect. | 16 | 23 |
| 292 | 52.87 | wind | 5.0 | 43200 | > th | dose independent | rect. | 22 | 23 |
| 293 | 52.87 | wind | 5.0 | 43200 | < th | dose independent | rect. | 18 | 23 |
| 296 | 52.88 | wind | 5.0 | 43200 | < th | dose independent | no | NA | NA |
| 303 | 52.88 | wind | 5.0 | 43200 | < th | dose independent | rect. | 4 | 23 |
| 304 | 52.88 | wind | 5.0 | 43200 | < th | dose independent | rect. | 16 | 23 |
| 317 | 52.89 | wind | 5.0 | 43200 | < th | dose independent | rect. | 2 | 23 |
| 321 | 52.90 | wind | 7.0 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 335 | 52.91 | wind | 5.0 | 43200 | < th | dose independent | rect. | 22 | 23 |
| 388 | 52.95 | wind | 5.0 | 43200 | < th | dose independent | rect. | 20 | 23 |
| 573 | 53.14 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 18 | 13 |
| 635 | 53.20 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 11 | 20 |
| 638 | 53.21 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 13 | 2 |
| 660 | 53.22 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 14 | 2 |
| 696 | 53.27 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 6 | 4 |
| 702 | 53.27 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 2 |
| 706 | 53.28 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 6 | 4 |
| 707 | 53.28 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 11 | 5 |
| 715 | 53.29 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 9 | 7 |
| 725 | 53.30 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 12 | 3 |
| 847 | 53.38 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 7 | 22 |
| 850 | 53.38 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 17 | 23 |
| 937 | 53.43 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 4 | 23 |
| 949 | 53.44 | wind | 3.0 | 43200 | > th | dose dependent | no | NA | NA |
| 978 | 53.45 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 11 | 20 |
| 981 | 53.45 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 2 | 23 |