Os11g0542800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os11g0542800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 88.9 | 0.443 | 3 | -0.00833 | 0.0613 | 0.185 | 0.363 | 0.0962 | 0.0867 | 10.9 | 1004 | 392 | -- | -- |
| 88.93 | 0.439 | 3 | -0.00819 | 0.0604 | 0.186 | 0.359 | -- | 0.0889 | 10.9 | 1004 | 392 | -- | -- |
| 89.45 | 0.44 | 3 | 0.00423 | 0.0588 | 0.18 | -- | 0.0731 | 0.0855 | 11.2 | 1004 | 391 | -- | -- |
| 89.47 | 0.441 | 3 | 0.00577 | 0.0572 | 0.182 | -- | -- | 0.0883 | 11.1 | 1004 | 393 | -- | -- |
| 89.67 | 0.441 | 3 | 0.00512 | -- | 0.179 | -- | 0.0655 | 0.0865 | -- | 1004 | 391 | -- | -- |
| 90.97 | 0.447 | 3.01 | -0.0107 | 0.0524 | -- | 0.331 | -- | 0.039 | 11 | -- | -- | -- | -- |
| 91.43 | 0.448 | 3.01 | 0.00318 | 0.0517 | -- | -- | -- | 0.0404 | 11.9 | -- | -- | -- | -- |
| 89.68 | 0.441 | 3 | 0.00504 | -- | 0.18 | -- | -- | 0.088 | -- | 1004 | 391 | -- | -- |
| 89.47 | 0.441 | 3 | -- | 0.0584 | 0.183 | -- | -- | 0.0885 | 11.2 | 1004 | 393 | -- | -- |
| 91.6 | 0.447 | 3.01 | 0.00162 | -- | -- | -- | -- | 0.0398 | -- | -- | -- | -- | -- |
| 91.43 | 0.447 | 3.01 | -- | 0.0516 | -- | -- | -- | 0.0401 | 11.9 | -- | -- | -- | -- |
| 89.68 | 0.441 | 3 | -- | -- | 0.18 | -- | -- | 0.0874 | -- | 1004 | 391 | -- | -- |
| 91.6 | 0.447 | 3.01 | -- | -- | -- | -- | -- | 0.0396 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 79.05 | temperature | 30 | 90 | > th | dose dependent | rect. | 8 | 1 |
| 15 | 79.07 | temperature | 30 | 90 | > th | dose dependent | rect. | 18 | 16 |
| 16 | 79.12 | temperature | 30 | 90 | > th | dose independent | rect. | 8 | 1 |
| 109 | 79.65 | temperature | 30 | 90 | > th | dose independent | rect. | 18 | 16 |
| 217 | 83.07 | atmosphere | 1000 | 90 | < th | dose independent | rect. | 9 | 2 |
| 219 | 83.29 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 9 | 3 |
| 230 | 83.91 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 9 | 1 |
| 309 | 85.43 | atmosphere | 1000 | 90 | < th | dose dependent | rect. | 8 | 1 |
| 324 | 85.45 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 10 | 1 |
| 412 | 87.11 | humidity | 70 | 90 | < th | dose dependent | rect. | 8 | 1 |
| 431 | 87.24 | atmosphere | 995 | 4320 | > th | dose independent | rect. | 4 | 10 |
| 444 | 87.30 | atmosphere | 995 | 4320 | < th | dose dependent | rect. | 14 | 1 |
| 459 | 87.33 | atmosphere | 995 | 4320 | > th | dose independent | rect. | 11 | 3 |
| 472 | 87.35 | atmosphere | 995 | 4320 | < th | dose independent | rect. | 14 | 1 |
| 485 | 87.36 | atmosphere | 995 | 4320 | > th | dose independent | rect. | 1 | 13 |
| 503 | 87.43 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 4 | 9 |
| 563 | 87.54 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 24 | 13 |
| 609 | 87.64 | humidity | 80 | 30 | < th | dose dependent | rect. | 19 | 1 |
| 639 | 87.66 | atmosphere | 1000 | 90 | > th | dose independent | rect. | 3 | 12 |
| 676 | 87.68 | atmosphere | 995 | 4320 | > th | dose independent | rect. | 8 | 8 |
| 684 | 87.69 | temperature | 25 | 30 | > th | dose dependent | sin | 8 | NA |
| 694 | 87.71 | atmosphere | 995 | 4320 | > th | dose independent | rect. | 14 | 2 |
| 702 | 87.74 | atmosphere | 995 | 4320 | > th | dose independent | rect. | 8 | 13 |
| 711 | 87.77 | temperature | 30 | 30 | > th | dose independent | sin | 8 | NA |
| 734 | 87.82 | atmosphere | 995 | 4320 | > th | dose independent | rect. | 8 | 10 |
| 737 | 87.83 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 24 | 15 |
| 752 | 87.88 | atmosphere | 1000 | 90 | < th | dose independent | sin | 3 | NA |
| 795 | 87.92 | atmosphere | 1000 | 90 | > th | dose independent | sin | 3 | NA |
| 805 | 87.94 | atmosphere | 995 | 4320 | > th | dose independent | rect. | 12 | 9 |
| 835 | 87.98 | atmosphere | 995 | 4320 | > th | dose independent | rect. | 14 | 7 |
| 844 | 88.00 | temperature | 30 | 90 | < th | dose independent | sin | 9 | NA |
| 851 | 88.00 | atmosphere | 995 | 4320 | < th | dose dependent | rect. | 4 | 11 |
| 864 | 88.02 | atmosphere | 1005 | 10 | > th | dose independent | rect. | 4 | 12 |
| 914 | 88.06 | atmosphere | 1000 | 10 | > th | dose independent | sin | 2 | NA |