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Os11g0540600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF247, plant family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.8 (0.0439) R2 : 0.944
β1 : 4.14 (0.157) R2dD : 0.0888 R2D : -0.0595
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.63 (0.22) R2dE : 0.0194 R2E : -0.347
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -7.46 (0.101) R2dN8 : 1.1 R2N8 : 0.84
σ : 0.801
deviance : 296.12
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C
peak time of C : --
E
wheather : temperature
threshold : 24.9
memory length : 78
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 1.72
open length of G : 5.32

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
266.56 0.767 11.8 3.77 0.418 2.42 -1.88 -6.74 -7.46 23 25.01 90 1.03 5.99
273.34 0.77 11.8 4.04 0.406 2.44 -1.89 -- -7.43 23 24.98 84 1.09 5.93
278.23 0.777 11.8 3.82 0.503 2.41 -- -7.06 -7.44 21 25.03 90 1.05 5.98
280.58 0.78 11.8 4.12 0.533 2.74 -- -- -7.47 20.5 24.9 80 1.66 5.4
292.67 0.797 11.8 3.87 -- 2.35 -- -6.48 -7.43 -- 25.03 91 1.07 5.96
344.92 0.871 11.7 4.11 0.41 -- -2.46 -- -6.97 2.05 -- -- -- --
367.66 0.898 11.7 4.18 0.407 -- -- -- -6.96 1.34 -- -- -- --
296.12 0.801 11.8 4.14 -- 2.63 -- -- -7.46 -- 24.9 78 1.72 5.32
701.84 1.23 11.8 -- 0.547 2.59 -- -- -7.63 21.6 24.52 1817 0.909 5.45
377.89 0.908 11.7 4.2 -- -- -- -- -6.95 -- -- -- -- --
828.59 1.35 11.8 -- 0.481 -- -- -- -7.43 1.66 -- -- -- --
419.62 0.954 12 -- -- 2.83 -- -- -8.5 -- 21.8 47520 1.54 4.53
842.73 1.35 11.8 -- -- -- -- -- -7.42 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 267.01 temperature 25.0 90 > th dose independent rect. 1 6
5 276.75 temperature 25.0 90 > th dose independent rect. 4 3
9 278.77 temperature 25.0 270 > th dose dependent rect. 1 6
12 282.86 temperature 25.0 30 > th dose dependent rect. 4 3
14 283.69 temperature 25.0 90 > th dose dependent rect. 2 4
16 284.32 temperature 25.0 10 > th dose dependent rect. 6 1
20 284.60 atmosphere 1010.0 30 < th dose independent rect. 6 1
21 284.73 radiation 10.0 30 < th dose independent rect. 6 1
25 285.42 temperature 25.0 1440 < th dose independent rect. 1 5
27 285.60 temperature 25.0 1440 < th dose independent rect. 1 1
34 286.73 temperature 25.0 720 < th dose independent rect. 24 7
40 288.06 wind 1.0 30 > th dose dependent rect. 6 1
45 288.34 temperature 25.0 1440 > th dose independent rect. 1 1
67 290.44 atmosphere 1010.0 30 < th dose dependent rect. 6 1
68 290.63 wind 9.0 4320 < th dose independent rect. 7 1
74 290.84 wind 3.0 30 > th dose independent rect. 6 1
76 290.94 temperature 25.0 1440 < th dose independent rect. 4 2
79 291.15 humidity 90.0 30 < th dose dependent rect. 6 1
93 292.13 wind 1.0 30 < th dose independent rect. 6 1
98 292.91 radiation 10.0 30 < th dose dependent rect. 6 1
106 293.40 radiation 1.0 10 > th dose dependent rect. 6 1
132 295.27 humidity 80.0 4320 < th dose dependent rect. 1 2
167 297.90 atmosphere 995.0 4320 > th dose independent rect. 7 1
186 298.63 wind 1.0 14400 < th dose independent rect. 24 4
193 298.79 temperature 25.0 720 > th dose dependent rect. 1 1
197 299.13 wind 1.0 14400 > th dose independent rect. 24 4
202 299.22 humidity 80.0 43200 > th dose dependent rect. 3 1
207 299.32 temperature 30.0 30 < th dose independent rect. 7 23
223 299.99 temperature 15.0 4320 > th dose independent rect. 7 1
226 300.08 wind 9.0 30 < th dose independent rect. 7 23
238 300.43 temperature 15.0 30 > th dose independent rect. 7 23
251 300.58 temperature 30.0 1440 < th dose independent rect. 7 1
255 300.58 humidity 50.0 1440 > th dose independent rect. 7 1
261 300.58 atmosphere 1015.0 1440 < th dose independent rect. 7 1
262 300.58 temperature 10.0 1440 > th dose independent rect. 8 23
266 300.62 wind 1.0 43200 < th dose independent rect. 9 5
272 300.70 humidity 90.0 30 < th dose independent rect. 6 1
277 300.76 atmosphere 1000.0 30 > th dose independent rect. 6 1
278 300.77 radiation 1.0 30 > th dose independent rect. 6 1
281 300.80 humidity 90.0 43200 < th dose dependent rect. 24 1
282 300.81 humidity 80.0 30 > th dose independent rect. 6 1
288 300.86 wind 5.0 30 < th dose independent rect. 6 1
291 300.86 temperature 10.0 30 > th dose independent rect. 6 1
293 300.86 temperature 30.0 30 < th dose independent rect. 6 1
294 300.86 humidity 50.0 30 > th dose independent rect. 6 1
302 300.86 precipitation 0.1 30 < th dose independent rect. 6 1
304 300.86 precipitation 0.1 30 < th dose dependent rect. 6 1
321 301.13 wind 1.0 43200 < th dose dependent rect. 9 5
333 301.47 wind 1.0 43200 < th dose independent rect. 9 8
338 301.55 wind 1.0 43200 > th dose independent rect. 9 5
353 301.78 wind 1.0 43200 > th dose independent rect. 9 8
366 301.92 wind 1.0 43200 < th dose independent rect. 11 2
401 302.13 wind 3.0 14400 < th dose dependent rect. 3 15
412 302.22 wind 3.0 14400 < th dose dependent rect. 1 18
445 302.55 humidity 50.0 30 > th dose dependent rect. 6 1
450 302.60 wind 1.0 43200 > th dose independent rect. 11 3
475 302.83 wind 3.0 14400 < th dose dependent sin 2 NA
542 303.28 wind 9.0 30 < th dose dependent rect. 6 1
546 303.34 precipitation 0.1 30 < th dose independent rect. 7 23
549 303.34 precipitation 0.1 30 < th dose dependent rect. 7 23
560 303.45 atmosphere 995.0 30 > th dose independent rect. 7 23
582 303.59 wind 1.0 43200 > th dose independent rect. 7 2
610 303.83 wind 1.0 14400 > th dose independent rect. 1 1
652 304.05 wind 1.0 43200 > th dose independent rect. 7 7
658 304.09 wind 1.0 43200 < th dose independent sin 22 NA
664 304.12 wind 1.0 43200 > th dose independent sin 22 NA
715 304.34 wind 1.0 43200 < th dose independent rect. 4 20
717 304.36 wind 1.0 14400 < th dose independent rect. 4 15
718 304.36 wind 1.0 43200 < th dose independent rect. 8 15
721 304.38 humidity 80.0 43200 > th dose dependent sin 8 NA
725 304.42 wind 1.0 43200 > th dose independent rect. 4 21
775 304.59 wind 1.0 14400 > th dose independent rect. 3 16
787 304.62 humidity 90.0 43200 > th dose independent rect. 1 1
805 304.66 humidity 90.0 43200 > th dose independent rect. 3 1
845 304.75 wind 1.0 43200 > th dose independent rect. 9 17
848 304.75 wind 1.0 43200 < th dose dependent rect. 7 7
849 304.75 wind 3.0 14400 < th dose dependent rect. 12 22
857 304.77 atmosphere 995.0 30 > th dose dependent rect. 6 1
882 304.82 humidity 80.0 4320 < th dose independent rect. 2 1
883 304.82 humidity 90.0 10 < th dose independent rect. 4 3
885 304.82 wind 1.0 43200 > th dose independent rect. 8 15
922 304.91 wind 1.0 43200 < th dose dependent rect. 6 3
933 304.94 wind 1.0 14400 < th dose independent rect. 24 19
938 304.95 wind 1.0 43200 > th dose independent rect. 6 13
982 305.05 humidity 90.0 43200 < th dose independent rect. 3 4