Os11g0540000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os11g0540000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 124.13 | 0.523 | 6.05 | 0.563 | 0.693 | 2.26 | -0.114 | -1.25 | -0.25 | 15.4 | 30.88 | 314 | -- | -- |
| 125.24 | 0.521 | 6.06 | 0.349 | 0.657 | 2.2 | 0.103 | -- | -0.268 | 15.5 | 29.36 | 336 | -- | -- |
| 124.09 | 0.519 | 6.05 | 0.525 | 0.69 | 2.26 | -- | -1.08 | -0.255 | 15.5 | 30.84 | 332 | -- | -- |
| 125.26 | 0.521 | 6.06 | 0.353 | 0.657 | 2.19 | -- | -- | -0.267 | 15.5 | 29.35 | 335 | -- | -- |
| 125.52 | 0.522 | 6.04 | 0.689 | -- | 2.02 | -- | -1.62 | -0.283 | -- | 32.3 | 937 | -- | -- |
| 188.79 | 0.644 | 6.15 | -0.202 | 0.277 | -- | 0.0497 | -- | -0.723 | 10.5 | -- | -- | -- | -- |
| 188.8 | 0.643 | 6.15 | -0.2 | 0.277 | -- | -- | -- | -0.723 | 10.5 | -- | -- | -- | -- |
| 127.68 | 0.526 | 6.08 | 0.369 | -- | 2.02 | -- | -- | -0.352 | -- | 31.45 | 934 | -- | -- |
| 128.19 | 0.527 | 6.08 | -- | 0.618 | 2.07 | -- | -- | -0.345 | 15.4 | 30.26 | 334 | -- | -- |
| 193.49 | 0.65 | 6.16 | -0.205 | -- | -- | -- | -- | -0.724 | -- | -- | -- | -- | -- |
| 189.85 | 0.645 | 6.15 | -- | 0.278 | -- | -- | -- | -0.701 | 10.6 | -- | -- | -- | -- |
| 130.81 | 0.533 | 6.1 | -- | -- | 1.87 | -- | -- | -0.423 | -- | 31.62 | 908 | -- | -- |
| 194.6 | 0.651 | 6.16 | -- | -- | -- | -- | -- | -0.701 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 120.56 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 2 | 120.58 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 3 | 120.65 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 4 |
| 4 | 120.87 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 7 | 121.49 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 8 | 121.65 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 12 |
| 17 | 122.13 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 2 |
| 23 | 122.38 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 5 |
| 33 | 122.58 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 9 |
| 37 | 122.75 | temperature | 20 | 1440 | > th | dose dependent | sin | 12 | NA |
| 49 | 122.92 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 9 |
| 77 | 123.27 | temperature | 30 | 270 | < th | dose dependent | rect. | 12 | 23 |
| 86 | 123.39 | temperature | 30 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 97 | 123.47 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 16 |
| 125 | 123.62 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 16 |
| 161 | 123.80 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 23 |
| 168 | 123.84 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 7 |
| 200 | 124.06 | temperature | 15 | 720 | > th | dose dependent | rect. | 9 | 22 |
| 211 | 124.12 | wind | 3 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 221 | 124.17 | temperature | 10 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 248 | 124.27 | temperature | 30 | 1440 | < th | dose dependent | sin | 13 | NA |
| 266 | 124.37 | temperature | 10 | 1440 | > th | dose dependent | sin | 13 | NA |
| 340 | 124.60 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 355 | 124.64 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 1 |
| 377 | 124.74 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 23 |
| 381 | 124.77 | temperature | 10 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 392 | 124.81 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 440 | 124.96 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 23 |
| 466 | 125.04 | temperature | 15 | 720 | > th | dose dependent | rect. | 6 | 23 |
| 527 | 125.26 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 23 |
| 546 | 125.32 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 552 | 125.34 | temperature | 30 | 270 | < th | dose dependent | rect. | 21 | 23 |
| 592 | 125.46 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 622 | 125.55 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 23 |
| 679 | 125.72 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 12 |
| 722 | 125.82 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 23 |
| 895 | 126.27 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 23 |
| 909 | 126.30 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 23 |
| 941 | 126.38 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 7 |