FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0539100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.28 (0.0208) R2 : 0.00015
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0114 (0.0437) R2dN8 : 0.000194 R2N8 : 0.00015
σ : 0.391
deviance : 70.25
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
64.17 0.376 3.29 0.176 0.215 0.253 -0.25 1.27 -0.0174 7.03 91 5899 -- --
66.19 0.379 3.29 0.0846 0.223 0.327 -0.23 -- -0.0599 6.95 96.07 4327 -- --
64.33 0.374 3.29 0.178 0.212 0.254 -- 1.28 -0.0144 7.1 91 5900 -- --
66.36 0.379 3.29 0.0821 0.213 0.336 -- -- -0.0556 7.04 132.6 4318 -- --
66.72 0.38 3.29 0.177 -- 0.248 -- 1.26 -0.00916 -- 91 5835 -- --
67.55 0.385 3.27 0.0715 0.213 -- -0.268 -- 0.0147 6.95 -- -- -- --
67.74 0.385 3.27 0.0669 0.212 -- -- -- 0.0155 7.12 -- -- -- --
68.75 0.386 3.29 0.0863 -- 0.332 -- -- -0.0495 -- 133.2 4282 -- --
66.54 0.38 3.29 -- 0.214 0.321 -- -- -0.0605 7.05 140.8 4310 -- --
70.12 0.391 3.28 0.071 -- -- -- -- 0.0193 -- -- -- -- --
67.85 0.385 3.27 -- 0.213 -- -- -- 0.00809 7.1 -- -- -- --
68.95 0.387 3.29 -- -- 0.323 -- -- -0.0573 -- 139.5 4279 -- --
70.25 0.391 3.28 -- -- -- -- -- 0.0114 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 60.13 humidity 80.0 10 < th dose independent rect. 6 2
3 60.22 radiation 10.0 30 > th dose independent rect. 7 1
6 60.53 humidity 80.0 10 < th dose independent rect. 23 9
34 61.71 radiation 10.0 10 > th dose independent rect. 16 16
38 62.18 temperature 25.0 30 > th dose independent rect. 7 1
39 62.22 atmosphere 995.0 30 > th dose independent rect. 3 23
47 62.71 atmosphere 995.0 720 > th dose independent rect. 23 16
48 62.71 atmosphere 1005.0 10 > th dose dependent rect. 2 2
52 62.84 atmosphere 1010.0 30 < th dose dependent rect. 2 1
53 62.88 wind 1.0 30 < th dose dependent rect. 2 1
54 62.93 wind 1.0 10 < th dose independent rect. 2 1
74 63.03 temperature 15.0 30 > th dose independent rect. 3 23
86 63.07 humidity 90.0 90 < th dose dependent rect. 1 7
90 63.08 temperature 30.0 30 < th dose dependent rect. 2 1
94 63.09 temperature 10.0 30 > th dose independent rect. 2 1
96 63.09 temperature 25.0 30 < th dose independent rect. 2 1
98 63.09 humidity 50.0 30 > th dose independent rect. 2 1
101 63.09 atmosphere 995.0 30 > th dose independent rect. 2 1
102 63.09 atmosphere 1010.0 30 < th dose independent rect. 2 1
104 63.09 radiation 1.0 30 < th dose independent rect. 2 1
109 63.09 precipitation 0.1 30 < th dose independent rect. 2 1
111 63.09 radiation 1.0 30 < th dose dependent rect. 2 1
116 63.09 precipitation 0.1 30 < th dose dependent rect. 2 1
117 63.10 temperature 10.0 10 > th dose dependent rect. 2 1
120 63.10 humidity 50.0 30 > th dose dependent rect. 2 1
154 63.14 radiation 10.0 10 > th dose independent sin 11 NA
159 63.16 atmosphere 995.0 30 > th dose dependent rect. 2 1
165 63.20 atmosphere 1005.0 30 > th dose independent rect. 2 1
167 63.21 wind 9.0 30 < th dose independent rect. 3 23
169 63.23 wind 1.0 30 > th dose independent rect. 2 1
177 63.29 humidity 80.0 14400 < th dose dependent rect. 4 5
216 63.51 precipitation 0.1 720 < th dose independent rect. 15 8
217 63.51 precipitation 0.1 720 < th dose dependent rect. 15 8
225 63.65 atmosphere 1000.0 90 > th dose independent rect. 8 23
228 63.66 temperature 10.0 720 > th dose independent rect. 15 8
229 63.66 temperature 10.0 720 > th dose independent rect. 23 16
230 63.67 humidity 90.0 10 < th dose dependent rect. 7 1
236 63.71 radiation 10.0 30 < th dose dependent rect. 3 23
247 63.79 atmosphere 995.0 720 > th dose independent rect. 8 7
248 63.81 humidity 70.0 14400 > th dose independent rect. 8 1
250 63.81 humidity 80.0 14400 < th dose dependent rect. 23 11
255 63.83 precipitation 0.1 30 < th dose independent rect. 3 23
257 63.83 precipitation 0.1 30 < th dose dependent rect. 3 23
259 63.86 radiation 1.0 43200 < th dose dependent rect. 3 1
261 63.88 atmosphere 1000.0 720 > th dose independent rect. 3 8
266 63.91 temperature 10.0 720 > th dose independent rect. 3 8
268 63.91 temperature 10.0 720 > th dose independent rect. 11 16
272 63.92 atmosphere 1005.0 30 > th dose independent rect. 7 1
273 63.92 humidity 70.0 14400 > th dose independent rect. 7 3
275 63.92 humidity 70.0 14400 > th dose independent rect. 5 5
284 63.93 humidity 70.0 14400 < th dose independent rect. 7 3
322 63.97 precipitation 0.1 720 < th dose independent rect. 11 16
323 63.97 precipitation 0.1 720 < th dose dependent rect. 11 16
345 64.04 wind 9.0 4320 < th dose independent rect. 3 1
362 64.10 humidity 50.0 720 > th dose independent rect. 3 8
374 64.20 temperature 20.0 10 > th dose dependent rect. 7 1
379 64.21 humidity 90.0 90 < th dose independent rect. 2 1
393 64.23 temperature 10.0 1440 > th dose independent rect. 3 1
396 64.23 temperature 30.0 1440 < th dose independent rect. 3 1
400 64.23 humidity 50.0 1440 > th dose independent rect. 3 1
409 64.23 atmosphere 995.0 1440 > th dose independent rect. 3 1
410 64.23 radiation 1.0 1440 < th dose independent rect. 3 1
430 64.23 wind 9.0 720 < th dose independent rect. 3 8
432 64.23 temperature 10.0 1440 > th dose independent rect. 4 23
451 64.24 humidity 60.0 14400 < th dose independent rect. 11 1
452 64.24 humidity 70.0 4320 > th dose dependent rect. 3 9
475 64.28 wind 5.0 10 < th dose dependent rect. 7 1
480 64.28 humidity 50.0 4320 > th dose dependent rect. 3 12
483 64.29 humidity 50.0 4320 > th dose dependent rect. 11 2
488 64.30 humidity 70.0 4320 > th dose independent rect. 10 1
493 64.30 humidity 50.0 4320 > th dose dependent rect. 23 16
494 64.31 wind 1.0 90 > th dose independent rect. 7 1
495 64.31 wind 3.0 90 < th dose independent rect. 7 1
527 64.34 humidity 80.0 4320 > th dose independent rect. 6 7
528 64.34 humidity 80.0 4320 < th dose independent rect. 7 7
532 64.34 humidity 50.0 14400 > th dose dependent rect. 8 1
546 64.35 humidity 80.0 4320 > th dose independent rect. 4 9
561 64.36 humidity 50.0 4320 > th dose dependent sin 4 NA
569 64.36 humidity 90.0 4320 < th dose dependent rect. 3 12
572 64.36 humidity 90.0 4320 < th dose dependent rect. 23 16
580 64.37 humidity 90.0 4320 < th dose dependent rect. 11 2
604 64.38 humidity 60.0 14400 < th dose dependent rect. 12 1
616 64.39 humidity 90.0 90 < th dose independent rect. 1 20
649 64.41 humidity 50.0 30 > th dose independent rect. 3 23
670 64.42 humidity 90.0 90 < th dose independent rect. 1 16
701 64.43 radiation 10.0 30 < th dose independent rect. 3 23
703 64.43 humidity 90.0 4320 < th dose dependent sin 4 NA
713 64.44 humidity 70.0 4320 > th dose independent sin 4 NA
799 64.46 wind 1.0 10 > th dose independent rect. 9 22
858 64.47 radiation 1.0 10 > th dose dependent rect. 7 1
914 64.49 wind 9.0 720 < th dose independent rect. 20 7
925 64.49 wind 9.0 720 < th dose independent rect. 15 17
955 64.50 wind 9.0 720 < th dose independent rect. 15 8