Os11g0537400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os11g0537400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 167.39 | 0.608 | 5.97 | 4.65 | 0.457 | -2.61 | 0.453 | 4.68 | 1.63 | 3.17 | 21.43 | 218 | -- | -- |
| 178.48 | 0.622 | 6.07 | 3.9 | 0.574 | -2.78 | -0.501 | -- | 1.41 | 3.46 | 15.96 | 214 | -- | -- |
| 167.9 | 0.603 | 5.98 | 4.59 | 0.453 | -2.62 | -- | 4.45 | 1.61 | 3 | 21.56 | 217 | -- | -- |
| 179.05 | 0.623 | 6.04 | 3.95 | 0.544 | -2.87 | -- | -- | 1.47 | 5.32 | 16.54 | 113 | -- | -- |
| 175.32 | 0.617 | 5.95 | 4.8 | -- | -3 | -- | 5.09 | 1.7 | -- | 21.93 | 198 | -- | -- |
| 267.36 | 0.767 | 6.15 | 3.28 | 1.41 | -- | 0.0323 | -- | 0.998 | 3.96 | -- | -- | -- | -- |
| 267.36 | 0.766 | 6.15 | 3.28 | 1.41 | -- | -- | -- | 0.997 | 3.96 | -- | -- | -- | -- |
| 189.19 | 0.641 | 6.05 | 3.91 | -- | -2.81 | -- | -- | 1.47 | -- | 20.05 | 140 | -- | -- |
| 526.68 | 1.07 | 6.2 | -- | 1.01 | -1.22 | -- | -- | 0.756 | 4.47 | 24.1 | 26 | -- | -- |
| 375.62 | 0.906 | 6.15 | 3.34 | -- | -- | -- | -- | 1.03 | -- | -- | -- | -- | -- |
| 551.16 | 1.1 | 6.23 | -- | 1.47 | -- | -- | -- | 0.632 | 3.93 | -- | -- | -- | -- |
| 558.87 | 1.1 | 6.2 | -- | -- | -2.02 | -- | -- | 0.83 | -- | 24.2 | 125 | -- | -- |
| 669.73 | 1.21 | 6.23 | -- | -- | -- | -- | -- | 0.664 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 161.03 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 2 | 162.45 | wind | 9.0 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 3 | 163.68 | wind | 9.0 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 4 | 164.52 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 19 | 6 |
| 5 | 164.71 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 4 | 22 |
| 7 | 165.13 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 19 | 8 |
| 13 | 165.71 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 15 | 165.97 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 24 | 166.96 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 1 | 23 |
| 34 | 167.67 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 7 |
| 41 | 168.03 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 9 |
| 47 | 168.32 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 52 | 168.40 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 53 | 168.45 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 9 |
| 63 | 169.13 | temperature | 20.0 | 270 | > th | dose dependent | no | NA | NA |
| 74 | 169.42 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 21 | 19 |
| 134 | 172.36 | temperature | 20.0 | 10 | > th | dose dependent | no | NA | NA |
| 147 | 172.90 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 149 | 173.01 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 160 | 173.56 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 187 | 174.29 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 17 | 12 |
| 188 | 174.30 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 17 | 5 |
| 189 | 174.31 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 17 | 7 |
| 193 | 174.35 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 17 | 2 |
| 205 | 174.36 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 17 | 9 |
| 225 | 174.68 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 255 | 175.27 | temperature | 20.0 | 720 | > th | dose dependent | sin | 4 | NA |
| 277 | 175.62 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 22 | 23 |
| 411 | 178.58 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 8 | 23 |
| 417 | 178.65 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 17 | 2 |
| 481 | 179.49 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 17 | 4 |
| 482 | 179.51 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 485 | 179.57 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 486 | 179.57 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 506 | 179.69 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 18 | 3 |
| 518 | 179.93 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 19 | 3 |
| 533 | 180.10 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 552 | 180.23 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 13 | 1 |
| 555 | 180.26 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 558 | 180.27 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 561 | 180.27 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 601 | 180.65 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 12 | 21 |
| 620 | 180.76 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 17 | 5 |
| 623 | 180.78 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 17 | 3 |
| 626 | 180.80 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 637 | 180.87 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 645 | 180.91 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 12 | 6 |
| 650 | 180.93 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 13 | 16 |
| 653 | 180.96 | temperature | 20.0 | 1440 | > th | dose dependent | sin | 16 | NA |
| 668 | 181.03 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 15 | 11 |
| 727 | 181.31 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 808 | 181.67 | radiation | 1.0 | 14400 | < th | dose independent | sin | 14 | NA |
| 811 | 181.67 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 24 | 19 |
| 817 | 181.70 | temperature | 20.0 | 4320 | > th | dose dependent | sin | 21 | NA |
| 820 | 181.70 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 17 | 13 |
| 899 | 182.07 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 7 | 22 |
| 913 | 182.12 | temperature | 20.0 | 1440 | > th | dose dependent | no | NA | NA |
| 914 | 182.12 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 948 | 182.19 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 3 | 23 |