Os11g0534300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, DHHC-type domain containing protein.
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Os11g0534300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, DHHC-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 405.64 | 0.946 | 3.21 | -0.022 | 0.269 | 7.98 | 0.594 | -19.6 | -0.201 | 5.83 | 1004 | 89 | 0.0734 | 2.77 |
| 412.39 | 0.953 | 3.2 | 0.0608 | 0.307 | 4.92 | 0.466 | -- | -0.222 | 5.76 | 1004 | 89 | 0.0734 | 2.77 |
| 405.92 | 0.938 | 3.22 | -0.00736 | 0.271 | 8.16 | -- | -19.8 | -0.217 | 5.71 | 1004 | 82 | 0.133 | 2.78 |
| 411.3 | 0.945 | 3.2 | 0.0598 | 0.291 | 5.04 | -- | -- | -0.214 | 5.84 | 1004 | 55 | 0.217 | 3.08 |
| 409.5 | 0.942 | 3.22 | -0.0299 | -- | 8.63 | -- | -21.6 | -0.204 | -- | 1004 | 67 | 0.0167 | 3.16 |
| 451.3 | 0.996 | 3.21 | 0.101 | 0.377 | -- | 0.614 | -- | -0.254 | 4.88 | -- | -- | -- | -- |
| 452.27 | 0.996 | 3.21 | 0.0993 | 0.381 | -- | -- | -- | -0.257 | 4.9 | -- | -- | -- | -- |
| 415.54 | 0.949 | 3.2 | 0.0618 | -- | 5.15 | -- | -- | -0.208 | -- | 1004 | 54 | 0.192 | 3.12 |
| 411.37 | 0.945 | 3.2 | -- | 0.29 | 5.08 | -- | -- | -0.224 | 5.87 | 1004 | 53 | 0.229 | 3.08 |
| 459.92 | 1 | 3.21 | 0.113 | -- | -- | -- | -- | -0.247 | -- | -- | -- | -- | -- |
| 452.53 | 0.995 | 3.21 | -- | 0.383 | -- | -- | -- | -0.268 | 4.9 | -- | -- | -- | -- |
| 415.64 | 0.95 | 3.21 | -- | -- | 5.16 | -- | -- | -0.215 | -- | 1004 | 54 | 0.203 | 3.11 |
| 460.26 | 1 | 3.22 | -- | -- | -- | -- | -- | -0.26 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 408.24 | atmosphere | 1005 | 90 | < th | dose dependent | rect. | 24 | 3 |
| 2 | 409.65 | atmosphere | 1005 | 90 | < th | dose dependent | rect. | 24 | 1 |
| 16 | 413.45 | temperature | 25 | 90 | > th | dose dependent | rect. | 1 | 1 |
| 17 | 414.87 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 1 | 1 |
| 32 | 415.20 | humidity | 80 | 90 | < th | dose dependent | rect. | 4 | 3 |
| 38 | 416.04 | humidity | 80 | 90 | < th | dose independent | rect. | 4 | 3 |
| 44 | 417.22 | temperature | 25 | 30 | > th | dose independent | rect. | 1 | 2 |
| 54 | 417.86 | atmosphere | 995 | 720 | < th | dose independent | rect. | 14 | 1 |
| 95 | 417.86 | atmosphere | 995 | 720 | < th | dose dependent | rect. | 14 | 1 |
| 136 | 417.87 | humidity | 80 | 10 | < th | dose independent | rect. | 5 | 1 |
| 141 | 417.87 | humidity | 80 | 10 | < th | dose dependent | rect. | 5 | 1 |
| 173 | 419.73 | atmosphere | 995 | 720 | < th | dose independent | sin | 7 | NA |
| 178 | 420.63 | atmosphere | 995 | 720 | < th | dose dependent | sin | 7 | NA |
| 195 | 422.58 | radiation | 1 | 90 | < th | dose independent | rect. | 8 | 1 |
| 198 | 422.58 | radiation | 1 | 90 | < th | dose dependent | rect. | 8 | 1 |
| 231 | 424.36 | atmosphere | 995 | 720 | > th | dose independent | sin | 1 | NA |
| 236 | 424.77 | wind | 3 | 10 | > th | dose dependent | rect. | 6 | 1 |
| 245 | 425.53 | temperature | 25 | 30 | > th | dose dependent | rect. | 1 | 6 |
| 281 | 426.83 | atmosphere | 995 | 720 | > th | dose independent | no | NA | NA |
| 296 | 427.50 | atmosphere | 1000 | 90 | < th | dose independent | rect. | 24 | 5 |
| 333 | 428.14 | atmosphere | 995 | 720 | < th | dose independent | no | NA | NA |
| 527 | 428.25 | wind | 3 | 10 | > th | dose independent | rect. | 5 | 2 |
| 549 | 428.85 | atmosphere | 1000 | 30 | < th | dose dependent | rect. | 1 | 12 |
| 597 | 429.39 | atmosphere | 995 | 720 | < th | dose dependent | no | NA | NA |
| 862 | 430.30 | atmosphere | 995 | 720 | > th | dose independent | sin | 13 | NA |
| 868 | 430.45 | atmosphere | 1000 | 90 | < th | dose independent | rect. | 24 | 7 |
| 869 | 430.49 | temperature | 20 | 30 | > th | dose independent | rect. | 14 | 14 |
| 901 | 431.21 | temperature | 20 | 30 | > th | dose independent | rect. | 12 | 16 |
| 908 | 431.37 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 1 | 7 |
| 929 | 431.78 | atmosphere | 995 | 720 | > th | dose independent | sin | 20 | NA |
| 994 | 433.34 | wind | 1 | 30 | < th | dose dependent | rect. | 22 | 2 |
| 996 | 433.39 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 24 | 13 |