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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0533600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.25 (0.044) R2 : 0.194
β1 : 0.904 (0.161) R2dD : 0.0578 R2D : 0.0558
β2 : 0.932 (0.106) R2dC : 0.138 R2C : 0.138
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0895 (0.0939) R2dN8 : 0.00215 R2N8 : -0.00271
σ : 0.827
deviance : 311.76
__
_____
C
peak time of C : 22.3
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
296.06 0.808 4.22 1.12 0.848 -1 -0.824 -2.74 0.0381 22.1 24.21 1047 -- --
302.91 0.811 4.28 0.668 0.765 -0.783 -0.442 -- -0.0329 22.5 45.81 776 -- --
298.02 0.804 4.22 1.16 0.902 -0.943 -- -2.74 0.0497 22.2 24.2 1244 -- --
303.7 0.812 4.27 0.699 0.769 -0.788 -- -- -0.0332 22.6 42.81 777 -- --
332.31 0.849 4.24 0.853 -- -1.36 -- -1.59 -0.045 -- 35 790 -- --
311.1 0.827 4.25 0.888 0.93 -- -0.403 -- 0.0886 22.3 -- -- -- --
311.76 0.827 4.25 0.904 0.932 -- -- -- 0.0895 22.3 -- -- -- --
334.47 0.852 4.27 0.559 -- -1.38 -- -- -0.121 -- 47.35 783 -- --
310.75 0.821 4.31 -- 0.91 -0.978 -- -- -0.19 22.4 81.55 6198 -- --
364.7 0.892 4.23 0.919 -- -- -- -- 0.0923 -- -- -- -- --
333.29 0.854 4.27 -- 0.937 -- -- -- -0.0111 22.4 -- -- -- --
341.84 0.861 4.29 -- -- -1.6 -- -- -0.211 -- 58.31 793 -- --
386.96 0.918 4.25 -- -- -- -- -- -0.00961 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 285.76 temperature 20.0 720 > th dose dependent rect. 3 3
2 286.21 wind 3.0 1440 > th dose independent rect. 11 1
4 287.01 wind 3.0 1440 < th dose independent rect. 11 1
8 288.35 wind 5.0 1440 < th dose dependent rect. 11 1
10 289.71 temperature 20.0 720 > th dose dependent rect. 3 6
12 290.16 wind 9.0 10 < th dose independent rect. 3 23
14 290.22 temperature 10.0 30 > th dose dependent rect. 3 23
17 290.49 atmosphere 1005.0 90 > th dose dependent rect. 2 1
21 291.29 temperature 25.0 90 > th dose dependent rect. 1 1
25 291.56 atmosphere 1005.0 10 > th dose dependent rect. 2 2
26 291.85 radiation 1.0 43200 < th dose dependent rect. 3 1
27 291.92 temperature 20.0 720 > th dose dependent rect. 23 10
30 292.15 humidity 90.0 30 > th dose independent rect. 2 1
32 292.22 wind 1.0 30 < th dose independent rect. 2 1
33 292.22 humidity 80.0 30 > th dose dependent rect. 2 1
34 292.23 temperature 20.0 30 > th dose independent rect. 2 1
40 292.31 humidity 90.0 90 < th dose independent rect. 2 1
45 292.42 temperature 25.0 30 < th dose independent rect. 2 1
46 292.42 atmosphere 1000.0 30 > th dose independent rect. 2 1
47 292.42 temperature 15.0 30 > th dose dependent rect. 2 1
52 292.45 wind 3.0 30 < th dose dependent rect. 2 1
56 292.48 atmosphere 995.0 30 > th dose dependent rect. 2 1
63 292.52 wind 9.0 30 < th dose independent rect. 2 1
64 292.52 temperature 10.0 30 > th dose independent rect. 2 1
67 292.52 humidity 50.0 30 > th dose independent rect. 2 1
71 292.52 atmosphere 1010.0 30 < th dose independent rect. 2 1
73 292.52 radiation 1.0 30 < th dose independent rect. 2 1
78 292.52 precipitation 0.1 30 < th dose independent rect. 2 1
79 292.52 temperature 10.0 30 > th dose independent rect. 3 23
81 292.52 radiation 1.0 30 < th dose dependent rect. 2 1
86 292.52 precipitation 0.1 30 < th dose dependent rect. 2 1
94 292.62 atmosphere 1015.0 30 < th dose dependent rect. 2 1
95 292.66 precipitation 0.1 10 < th dose independent rect. 3 23
96 292.66 precipitation 0.1 10 < th dose dependent rect. 3 23
97 292.71 temperature 30.0 30 < th dose dependent rect. 2 1
107 292.85 humidity 60.0 43200 > th dose independent rect. 9 1
109 292.89 wind 1.0 30 > th dose independent rect. 2 1
124 293.05 humidity 50.0 43200 > th dose independent rect. 15 1
157 293.21 atmosphere 995.0 30 > th dose independent rect. 3 23
158 293.21 humidity 90.0 14400 < th dose dependent rect. 1 2
168 293.40 temperature 10.0 720 > th dose dependent rect. 3 6
178 293.65 humidity 60.0 43200 < th dose dependent rect. 9 7
194 293.82 humidity 60.0 43200 < th dose independent rect. 8 4
196 293.85 humidity 90.0 14400 < th dose dependent rect. 24 4
200 293.86 wind 9.0 30 < th dose dependent rect. 3 23
211 293.95 wind 9.0 720 < th dose independent rect. 3 8
216 294.03 temperature 20.0 720 > th dose dependent sin 7 NA
220 294.05 humidity 60.0 43200 < th dose dependent sin 3 NA
241 294.12 humidity 60.0 43200 > th dose independent rect. 8 3
244 294.13 humidity 60.0 43200 < th dose independent rect. 24 12
250 294.13 temperature 20.0 30 > th dose dependent rect. 3 8
251 294.14 humidity 60.0 43200 < th dose independent rect. 2 10
254 294.14 temperature 25.0 1440 < th dose dependent rect. 21 1
258 294.15 wind 9.0 1440 < th dose independent rect. 3 1
259 294.15 temperature 10.0 1440 > th dose independent rect. 3 1
262 294.15 temperature 30.0 1440 < th dose independent rect. 3 1
266 294.15 humidity 50.0 1440 > th dose independent rect. 3 1
275 294.15 atmosphere 995.0 1440 > th dose independent rect. 3 1
276 294.15 radiation 1.0 1440 < th dose independent rect. 3 1
297 294.15 temperature 10.0 1440 > th dose independent rect. 4 23
323 294.22 temperature 25.0 270 > th dose dependent rect. 22 5
348 294.37 temperature 20.0 10 > th dose dependent rect. 3 17
358 294.44 temperature 25.0 30 > th dose dependent rect. 12 23
361 294.47 temperature 25.0 1440 < th dose dependent rect. 20 6
376 294.54 humidity 70.0 43200 < th dose dependent rect. 8 2
382 294.56 humidity 60.0 43200 > th dose independent rect. 2 9
400 294.67 temperature 10.0 720 > th dose dependent rect. 3 8
406 294.69 wind 1.0 43200 < th dose dependent rect. 6 2
420 294.71 humidity 60.0 43200 < th dose dependent rect. 14 23
427 294.75 temperature 25.0 270 > th dose independent rect. 22 4
454 294.81 temperature 30.0 720 < th dose dependent rect. 24 10
478 294.83 humidity 60.0 43200 < th dose dependent rect. 9 22
485 294.84 humidity 60.0 43200 < th dose dependent rect. 9 20
502 294.86 temperature 25.0 1440 < th dose independent rect. 20 1
517 294.87 humidity 60.0 43200 < th dose dependent rect. 14 1
530 294.89 humidity 60.0 43200 < th dose dependent no NA NA
543 294.89 humidity 60.0 43200 < th dose dependent rect. 6 23
593 295.00 humidity 50.0 10 < th dose independent rect. 11 1
613 295.00 humidity 50.0 43200 > th dose independent rect. 13 5
687 295.00 humidity 50.0 10 < th dose dependent rect. 11 1
787 295.04 temperature 25.0 720 < th dose dependent rect. 2 3
790 295.05 atmosphere 1015.0 720 < th dose independent rect. 3 8
803 295.08 wind 9.0 43200 > th dose dependent rect. 13 1
811 295.10 temperature 25.0 270 > th dose independent rect. 20 7
816 295.12 temperature 30.0 720 < th dose dependent rect. 2 1
825 295.15 wind 5.0 14400 > th dose independent rect. 11 4
826 295.15 temperature 25.0 270 > th dose independent rect. 18 9
830 295.15 precipitation 0.1 14400 > th dose dependent rect. 3 6
849 295.19 humidity 50.0 43200 > th dose independent rect. 13 10
850 295.19 humidity 50.0 43200 > th dose independent rect. 13 14
856 295.20 humidity 50.0 43200 > th dose independent rect. 13 12
878 295.28 wind 5.0 14400 < th dose independent rect. 11 4
902 295.38 humidity 70.0 43200 < th dose dependent rect. 2 8
933 295.49 temperature 10.0 720 > th dose independent rect. 15 8
935 295.49 temperature 10.0 720 > th dose independent rect. 23 16
944 295.52 temperature 10.0 720 > th dose independent rect. 3 8
945 295.52 atmosphere 995.0 720 > th dose independent rect. 3 8
946 295.52 temperature 10.0 720 > th dose independent rect. 11 16
960 295.56 temperature 25.0 10 > th dose independent rect. 1 19
961 295.56 temperature 10.0 1440 > th dose dependent rect. 21 6
987 295.64 wind 9.0 720 < th dose independent rect. 23 16