Os11g0533100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : DEAD/DEAH box helicase, N-terminal domain containing protein.
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Os11g0533100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : DEAD/DEAH box helicase, N-terminal domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 177.91 | 0.627 | 10.8 | 0.299 | 3.87 | -3.99 | -2.03 | -1.85 | -0.271 | 16 | 9.772 | 261 | 2.8 | 2.98 |
| 180.9 | 0.626 | 10.8 | 0.428 | 3.86 | -4 | -1.57 | -- | -0.268 | 16 | 9.514 | 263 | 2.75 | 3 |
| 185.98 | 0.635 | 10.8 | 0.407 | 3.87 | -4.03 | -- | -0.311 | -0.223 | 16 | 10.14 | 257 | 2.75 | 3.12 |
| 185.72 | 0.635 | 10.8 | 0.405 | 3.86 | -4 | -- | -- | -0.246 | 16.1 | 9.469 | 259 | 2.7 | 3.13 |
| 487.25 | 1.03 | 10.7 | 0.891 | -- | -5.45 | -- | 2.2 | -0.13 | -- | -21.02 | 230 | 0.533 | 6.5 |
| 475.18 | 1.02 | 10.9 | 0.22 | 6.13 | -- | -0.73 | -- | -0.605 | 16.8 | -- | -- | -- | -- |
| 476.56 | 1.02 | 10.9 | 0.217 | 6.12 | -- | -- | -- | -0.608 | 16.8 | -- | -- | -- | -- |
| 470.75 | 1.01 | 10.7 | 0.468 | -- | -5.73 | -- | -- | -0.149 | -- | -6.478 | 251 | 0.241 | 6.72 |
| 189.95 | 0.642 | 10.8 | -- | 3.87 | -3.97 | -- | -- | -0.293 | 16.1 | 9.386 | 259 | 2.69 | 3.12 |
| 2459.54 | 2.32 | 10.9 | -0.0116 | -- | -- | -- | -- | -0.767 | -- | -- | -- | -- | -- |
| 477.8 | 1.02 | 10.9 | -- | 6.12 | -- | -- | -- | -0.633 | 16.8 | -- | -- | -- | -- |
| 476.14 | 1.02 | 10.8 | -- | -- | -5.74 | -- | -- | -0.203 | -- | -6.985 | 251 | 0.266 | 6.68 |
| 2459.54 | 2.31 | 10.9 | -- | -- | -- | -- | -- | -0.766 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 189.86 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 3 | 3 |
| 6 | 202.65 | wind | 9.0 | 270 | < th | dose independent | rect. | 5 | 22 |
| 7 | 205.01 | radiation | 10.0 | 270 | < th | dose independent | rect. | 2 | 5 |
| 9 | 205.13 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 2 |
| 10 | 205.13 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 2 |
| 12 | 206.33 | wind | 7.0 | 270 | < th | dose independent | rect. | 3 | 2 |
| 14 | 207.43 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 3 | 2 |
| 16 | 208.04 | radiation | 1.0 | 270 | < th | dose independent | rect. | 3 | 2 |
| 22 | 208.27 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 2 |
| 24 | 208.27 | temperature | 30.0 | 270 | < th | dose independent | rect. | 3 | 2 |
| 25 | 208.27 | humidity | 50.0 | 270 | > th | dose independent | rect. | 3 | 2 |
| 28 | 208.27 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 2 |
| 29 | 208.27 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 3 | 2 |
| 34 | 208.27 | temperature | 10.0 | 270 | > th | dose independent | rect. | 5 | 22 |
| 48 | 212.37 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 2 | 5 |
| 53 | 213.74 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 3 | 2 |
| 55 | 213.83 | temperature | 10.0 | 270 | > th | dose independent | rect. | 2 | 4 |
| 57 | 213.83 | temperature | 30.0 | 270 | < th | dose independent | rect. | 2 | 4 |
| 58 | 213.83 | humidity | 50.0 | 270 | > th | dose independent | rect. | 2 | 4 |
| 61 | 213.83 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 2 | 4 |
| 62 | 213.83 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 2 | 4 |
| 66 | 213.83 | temperature | 10.0 | 270 | > th | dose independent | rect. | 6 | 20 |
| 85 | 214.48 | wind | 9.0 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 92 | 215.53 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 20 |
| 93 | 215.53 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 20 |
| 161 | 225.43 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 18 |
| 163 | 225.43 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 18 |
| 200 | 230.84 | wind | 9.0 | 10 | < th | dose independent | rect. | 8 | 20 |
| 311 | 239.16 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 3 | 9 |
| 377 | 242.51 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 6 | 20 |
| 396 | 244.15 | radiation | 1.0 | 270 | < th | dose independent | rect. | 3 | 9 |
| 403 | 244.46 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 8 | 19 |
| 565 | 250.18 | wind | 1.0 | 270 | > th | dose independent | rect. | 2 | 4 |
| 581 | 250.36 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 3 | 2 |
| 630 | 253.84 | wind | 9.0 | 270 | < th | dose independent | rect. | 21 | 14 |
| 633 | 254.03 | temperature | 15.0 | 270 | > th | dose independent | rect. | 11 | 10 |
| 634 | 254.09 | wind | 1.0 | 270 | > th | dose independent | rect. | 7 | 18 |
| 635 | 254.15 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 11 | 10 |
| 638 | 254.31 | wind | 1.0 | 270 | > th | dose independent | rect. | 3 | 2 |
| 664 | 255.75 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 3 | 2 |
| 665 | 256.04 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 2 | 4 |
| 682 | 256.76 | temperature | 10.0 | 270 | > th | dose independent | rect. | 21 | 14 |
| 683 | 256.76 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 21 | 14 |
| 685 | 256.83 | humidity | 50.0 | 270 | > th | dose independent | rect. | 21 | 14 |
| 702 | 257.67 | radiation | 40.0 | 270 | < th | dose independent | rect. | 13 | 17 |
| 718 | 259.90 | wind | 1.0 | 270 | > th | dose independent | rect. | 1 | 6 |
| 776 | 263.92 | temperature | 15.0 | 90 | > th | dose independent | rect. | 15 | 16 |
| 792 | 264.67 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 21 | 14 |
| 794 | 264.67 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 21 | 14 |
| 796 | 264.72 | wind | 9.0 | 270 | < th | dose independent | rect. | 6 | 9 |
| 824 | 265.48 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 7 | 4 |
| 850 | 266.18 | wind | 7.0 | 270 | < th | dose independent | rect. | 18 | 8 |
| 851 | 266.22 | temperature | 15.0 | 270 | > th | dose independent | rect. | 13 | 17 |
| 860 | 266.73 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 15 | 15 |
| 863 | 266.84 | wind | 7.0 | 270 | < th | dose independent | rect. | 6 | 7 |
| 870 | 267.08 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 9 |
| 871 | 267.08 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 9 |
| 889 | 267.75 | humidity | 50.0 | 270 | > th | dose independent | rect. | 6 | 20 |
| 915 | 268.62 | temperature | 15.0 | 270 | > th | dose independent | rect. | 6 | 7 |
| 921 | 268.77 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 18 | 8 |
| 922 | 268.77 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 18 | 8 |
| 925 | 268.97 | temperature | 10.0 | 270 | > th | dose independent | rect. | 6 | 9 |
| 926 | 268.97 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 6 | 9 |
| 932 | 269.11 | wind | 9.0 | 90 | < th | dose dependent | rect. | 8 | 19 |
| 946 | 269.42 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 6 | 9 |
| 947 | 269.46 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 11 | 10 |
| 948 | 269.46 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 11 | 10 |
| 950 | 269.60 | humidity | 50.0 | 30 | > th | dose independent | rect. | 8 | 20 |
| 988 | 270.56 | wind | 9.0 | 270 | < th | dose independent | rect. | 11 | 10 |
| 990 | 270.65 | radiation | 10.0 | 270 | < th | dose independent | rect. | 18 | 8 |