Os11g0532900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os11g0532900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 108.73 | 0.49 | 5.97 | 1.73 | 2.81 | 1.79 | -0.17 | -1.7 | 0.601 | 19.5 | 24.57 | 644 | -- | -- |
| 109.63 | 0.488 | 6 | 1.45 | 2.77 | 2.12 | 0.193 | -- | 0.524 | 19.1 | 23.88 | 358 | -- | -- |
| 107.54 | 0.483 | 5.99 | 1.68 | 2.79 | 1.83 | -- | -1.58 | 0.552 | 19.3 | 24.2 | 465 | -- | -- |
| 109.73 | 0.488 | 6 | 1.44 | 2.77 | 2.12 | -- | -- | 0.52 | 19.1 | 23.88 | 359 | -- | -- |
| 470.41 | 1.02 | 5.94 | 1.41 | -- | 1.81 | -- | -0.885 | 0.445 | -- | 24.2 | 465 | -- | -- |
| 168.36 | 0.608 | 6.09 | 0.92 | 2.61 | -- | 0.31 | -- | 0.155 | 19.3 | -- | -- | -- | -- |
| 168.62 | 0.608 | 6.08 | 0.913 | 2.61 | -- | -- | -- | 0.155 | 19.3 | -- | -- | -- | -- |
| 470.88 | 1.02 | 5.96 | 1.29 | -- | 1.94 | -- | -- | 0.409 | -- | 23.88 | 359 | -- | -- |
| 157.94 | 0.585 | 6.07 | -- | 2.71 | 1.49 | -- | -- | 0.263 | 19.2 | 23.89 | 373 | -- | -- |
| 529.79 | 1.08 | 6.03 | 0.868 | -- | -- | -- | -- | 0.111 | -- | -- | -- | -- | -- |
| 190.59 | 0.646 | 6.11 | -- | 2.6 | -- | -- | -- | 0.0538 | 19.3 | -- | -- | -- | -- |
| 511.47 | 1.06 | 6 | -- | -- | 1.51 | -- | -- | 0.21 | -- | 23.88 | 359 | -- | -- |
| 549.65 | 1.09 | 6.05 | -- | -- | -- | -- | -- | 0.0151 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 102.24 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 15 |
| 2 | 102.30 | temperature | 30 | 720 | < th | dose dependent | rect. | 18 | 13 |
| 4 | 102.71 | temperature | 25 | 30 | < th | dose dependent | sin | 5 | NA |
| 9 | 103.37 | temperature | 30 | 720 | < th | dose dependent | sin | 12 | NA |
| 18 | 104.15 | temperature | 15 | 10 | > th | dose dependent | sin | 6 | NA |
| 23 | 104.71 | temperature | 25 | 90 | < th | dose dependent | rect. | 23 | 15 |
| 27 | 104.84 | temperature | 25 | 270 | < th | dose dependent | rect. | 21 | 17 |
| 44 | 105.36 | temperature | 15 | 720 | > th | dose dependent | sin | 12 | NA |
| 58 | 105.63 | temperature | 25 | 270 | < th | dose dependent | sin | 8 | NA |
| 64 | 105.73 | temperature | 15 | 720 | > th | dose dependent | rect. | 16 | 16 |
| 76 | 106.05 | temperature | 25 | 90 | < th | dose dependent | rect. | 23 | 18 |
| 110 | 107.02 | temperature | 25 | 90 | < th | dose dependent | rect. | 23 | 20 |
| 143 | 107.60 | temperature | 25 | 720 | < th | dose dependent | rect. | 11 | 21 |
| 148 | 107.72 | temperature | 25 | 720 | < th | dose dependent | rect. | 9 | 21 |
| 281 | 109.19 | temperature | 15 | 720 | > th | dose dependent | rect. | 20 | 7 |
| 328 | 109.71 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 343 | 109.96 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 23 |
| 365 | 110.22 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 366 | 110.23 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 23 |
| 616 | 113.08 | temperature | 25 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 686 | 113.76 | temperature | 25 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 689 | 113.78 | temperature | 25 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 692 | 113.81 | temperature | 25 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 777 | 114.57 | temperature | 15 | 720 | > th | dose dependent | rect. | 11 | 22 |
| 797 | 114.77 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 18 |
| 867 | 115.06 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 23 |
| 905 | 115.21 | temperature | 30 | 1440 | < th | dose dependent | rect. | 5 | 18 |
| 951 | 115.34 | temperature | 10 | 1440 | > th | dose dependent | sin | 0 | NA |