Os11g0528600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Indole-3-acetic acid-amido synthetase GH3.17 (EC 6.3.2.-) (Auxin- responsive GH3-like protein 17) (AtGH3-17).
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Os11g0528600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Indole-3-acetic acid-amido synthetase GH3.17 (EC 6.3.2.-) (Auxin- responsive GH3-like protein 17) (AtGH3-17).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 379.89 | 0.916 | 4.78 | 0.567 | 1.46 | -0.184 | -1.62 | -2.84 | -1.29 | 20.8 | 19.89 | 269 | -- | -- |
| 398.88 | 0.937 | 4.84 | 0.298 | 1.46 | 0.669 | -1.3 | -- | -1.35 | 20.7 | 18.45 | 544 | -- | -- |
| 387.21 | 0.916 | 4.78 | 0.58 | 1.45 | -0.104 | -- | -2.65 | -1.29 | 20.9 | 19.7 | 208 | -- | -- |
| 395.05 | 0.926 | 4.83 | 0.442 | 1.55 | 1.22 | -- | -- | -1.28 | 21.1 | 18.31 | 1471 | -- | -- |
| 506.32 | 1.05 | 4.75 | 0.643 | -- | 0.43 | -- | -2.07 | -1.25 | -- | 19.6 | 187 | -- | -- |
| 405.6 | 0.944 | 4.85 | 0.136 | 1.49 | -- | -1.44 | -- | -1.41 | 20.9 | -- | -- | -- | -- |
| 412.65 | 0.951 | 4.85 | 0.185 | 1.49 | -- | -- | -- | -1.4 | 20.9 | -- | -- | -- | -- |
| 516.25 | 1.06 | 4.77 | 0.643 | -- | 1.78 | -- | -- | -1.23 | -- | 18.03 | 1602 | -- | -- |
| 401.12 | 0.933 | 4.84 | -- | 1.46 | 1.19 | -- | -- | -1.32 | 20.9 | 18.1 | 1608 | -- | -- |
| 539.94 | 1.09 | 4.81 | 0.184 | -- | -- | -- | -- | -1.42 | -- | -- | -- | -- | -- |
| 413.55 | 0.951 | 4.86 | -- | 1.49 | -- | -- | -- | -1.42 | 20.9 | -- | -- | -- | -- |
| 522.73 | 1.07 | 4.81 | -- | -- | 1.06 | -- | -- | -1.39 | -- | 18.03 | 1602 | -- | -- |
| 540.84 | 1.09 | 4.82 | -- | -- | -- | -- | -- | -1.44 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 360.91 | wind | 9 | 14400 | > th | dose dependent | rect. | 18 | 8 |
| 4 | 360.97 | wind | 3 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 8 | 361.38 | wind | 9 | 14400 | > th | dose independent | rect. | 18 | 8 |
| 10 | 361.39 | wind | 9 | 14400 | > th | dose independent | rect. | 18 | 6 |
| 13 | 361.47 | wind | 9 | 14400 | < th | dose independent | rect. | 18 | 8 |
| 22 | 362.06 | wind | 5 | 14400 | > th | dose dependent | rect. | 20 | 4 |
| 26 | 362.20 | wind | 7 | 14400 | > th | dose independent | rect. | 20 | 3 |
| 27 | 362.20 | wind | 7 | 14400 | < th | dose independent | rect. | 20 | 3 |
| 39 | 362.64 | wind | 9 | 14400 | < th | dose independent | rect. | 20 | 6 |
| 74 | 363.31 | wind | 9 | 14400 | > th | dose dependent | rect. | 18 | 17 |
| 118 | 363.68 | wind | 5 | 14400 | > th | dose independent | rect. | 16 | 17 |
| 136 | 363.89 | wind | 5 | 14400 | < th | dose independent | rect. | 16 | 17 |
| 150 | 364.13 | wind | 5 | 14400 | > th | dose independent | sin | 12 | NA |
| 165 | 364.41 | wind | 5 | 14400 | < th | dose independent | sin | 12 | NA |
| 178 | 364.59 | wind | 5 | 14400 | > th | dose dependent | rect. | 17 | 17 |
| 180 | 364.62 | wind | 5 | 14400 | > th | dose dependent | sin | 12 | NA |
| 209 | 365.11 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 24 | 16 |
| 214 | 365.16 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 23 | 17 |
| 241 | 365.47 | wind | 5 | 14400 | > th | dose dependent | rect. | 17 | 14 |
| 262 | 365.71 | wind | 9 | 14400 | > th | dose independent | rect. | 18 | 16 |
| 277 | 365.85 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 18 | 22 |
| 321 | 366.14 | wind | 9 | 14400 | > th | dose dependent | rect. | 20 | 15 |
| 345 | 366.31 | atmosphere | 995 | 43200 | > th | dose independent | sin | 4 | NA |
| 373 | 366.49 | wind | 5 | 14400 | > th | dose independent | rect. | 17 | 22 |
| 382 | 366.55 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 7 | 20 |
| 404 | 366.70 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 13 | 12 |
| 409 | 366.73 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 19 | 21 |
| 416 | 366.77 | wind | 5 | 14400 | < th | dose independent | rect. | 17 | 22 |
| 572 | 367.51 | humidity | 70 | 43200 | > th | dose independent | rect. | 19 | 11 |
| 583 | 367.54 | humidity | 70 | 43200 | > th | dose independent | rect. | 19 | 9 |
| 591 | 367.57 | humidity | 70 | 43200 | < th | dose independent | rect. | 19 | 4 |
| 636 | 367.77 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 7 | 20 |
| 678 | 367.88 | humidity | 70 | 43200 | < th | dose independent | rect. | 19 | 11 |
| 693 | 367.92 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 12 | 14 |
| 717 | 368.01 | atmosphere | 995 | 43200 | < th | dose dependent | sin | 17 | NA |
| 747 | 368.15 | wind | 9 | 14400 | < th | dose independent | rect. | 20 | 14 |
| 750 | 368.17 | atmosphere | 995 | 43200 | < th | dose independent | sin | 4 | NA |
| 867 | 368.58 | atmosphere | 995 | 43200 | < th | dose independent | no | NA | NA |
| 912 | 368.71 | wind | 9 | 14400 | < th | dose dependent | rect. | 21 | 1 |