Os11g0528300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF339 family protein.
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Os11g0528300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF339 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 24.46 | 0.232 | 12.9 | -0.484 | 0.488 | 0.548 | 0.433 | -0.708 | -0.199 | 8.55 | 10 | 1432 | -- | -- |
| 25.27 | 0.234 | 12.9 | -0.406 | 0.493 | 0.531 | 0.534 | -- | -0.15 | 8.57 | 10 | 1427 | -- | -- |
| 24.97 | 0.233 | 12.9 | -0.463 | 0.485 | 0.532 | -- | -0.675 | -0.183 | 8.65 | 10.09 | 1378 | -- | -- |
| 25.88 | 0.237 | 12.9 | -0.364 | 0.501 | 0.525 | -- | -- | -0.155 | 8.52 | 10 | 1429 | -- | -- |
| 39.83 | 0.294 | 12.9 | -0.367 | -- | 0.443 | -- | -0.397 | -0.137 | -- | 20.15 | 1516 | -- | -- |
| 33.31 | 0.271 | 12.8 | -0.202 | 0.482 | -- | 0.394 | -- | 0.0038 | 8.35 | -- | -- | -- | -- |
| 33.8 | 0.272 | 12.8 | -0.19 | 0.482 | -- | -- | -- | 0.00345 | 8.28 | -- | -- | -- | -- |
| 38.04 | 0.287 | 12.9 | -0.34 | -- | 0.544 | -- | -- | -0.118 | -- | 10 | 1549 | -- | -- |
| 28.48 | 0.249 | 12.9 | -- | 0.435 | 0.486 | -- | -- | -0.166 | 8.43 | 3.762 | 1471 | -- | -- |
| 46.66 | 0.319 | 12.8 | -0.187 | -- | -- | -- | -- | 0.00875 | -- | -- | -- | -- | -- |
| 34.75 | 0.276 | 12.8 | -- | 0.481 | -- | -- | -- | 0.0247 | 8.31 | -- | -- | -- | -- |
| 37.77 | 0.286 | 12.9 | -- | -- | 0.607 | -- | -- | -0.144 | -- | 3.738 | 1516 | -- | -- |
| 47.58 | 0.322 | 12.8 | -- | -- | -- | -- | -- | 0.0295 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 23.62 | humidity | 50 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 2 | 23.67 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 8 |
| 3 | 23.68 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 9 |
| 4 | 23.70 | humidity | 90 | 1440 | < th | dose dependent | rect. | 12 | 1 |
| 7 | 23.76 | radiation | 10 | 1440 | < th | dose dependent | sin | 21 | NA |
| 22 | 23.81 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 18 |
| 40 | 23.95 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 9 |
| 50 | 24.04 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 53 | 24.10 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 22 |
| 89 | 24.26 | radiation | 10 | 1440 | > th | dose independent | rect. | 6 | 9 |
| 125 | 24.32 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 137 | 24.33 | radiation | 10 | 1440 | > th | dose independent | sin | 1 | NA |
| 183 | 24.35 | radiation | 10 | 1440 | > th | dose independent | rect. | 8 | 23 |
| 188 | 24.37 | humidity | 80 | 1440 | < th | dose independent | sin | 2 | NA |
| 223 | 24.40 | humidity | 80 | 1440 | > th | dose independent | sin | 1 | NA |
| 251 | 24.49 | radiation | 10 | 1440 | > th | dose independent | no | NA | NA |
| 337 | 24.52 | radiation | 10 | 1440 | > th | dose independent | rect. | 8 | 6 |
| 338 | 24.52 | radiation | 10 | 1440 | > th | dose independent | rect. | 8 | 9 |
| 371 | 24.61 | humidity | 90 | 1440 | < th | dose dependent | rect. | 8 | 7 |
| 411 | 24.66 | humidity | 50 | 1440 | > th | dose dependent | rect. | 8 | 8 |
| 638 | 24.96 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 6 |
| 653 | 24.96 | humidity | 50 | 720 | > th | dose dependent | rect. | 7 | 21 |
| 656 | 24.97 | humidity | 90 | 1440 | < th | dose dependent | sin | 0 | NA |
| 731 | 25.04 | humidity | 80 | 1440 | < th | dose dependent | sin | 3 | NA |
| 750 | 25.07 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 766 | 25.09 | humidity | 80 | 1440 | > th | dose dependent | rect. | 12 | 2 |
| 782 | 25.10 | humidity | 50 | 720 | > th | dose dependent | rect. | 7 | 14 |
| 786 | 25.11 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 851 | 25.17 | humidity | 50 | 1440 | > th | dose dependent | sin | 23 | NA |
| 962 | 25.26 | radiation | 20 | 1440 | < th | dose dependent | rect. | 2 | 16 |