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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0527000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.01 (0.0175) R2 : 0.00638
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0631 (0.0369) R2dN8 : 0.00823 R2N8 : 0.00638
σ : 0.33
deviance : 49.95
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
45.75 0.318 3.01 -0.117 0.312 0.312 -0.681 -0.972 0.0731 15.6 15.56 242 -- --
47.11 0.32 3.01 -0.155 0.294 0.327 0.214 -- 0.0642 14.8 20.1 197 -- --
46.15 0.316 3.01 -0.124 0.277 0.303 -- -0.54 0.0703 15.4 19.23 211 -- --
47.27 0.32 3.01 -0.127 0.268 0.28 -- -- 0.0657 15.6 20 204 -- --
47.46 0.321 3.01 -0.175 -- 0.109 -- -0.479 0.0526 -- 20 80 -- --
47.56 0.323 3.02 -0.163 0.131 -- -0.47 -- 0.0469 21.3 -- -- -- --
48.34 0.326 3.02 -0.146 0.136 -- -- -- 0.048 20.8 -- -- -- --
48.67 0.325 3.01 -0.144 -- 0.114 -- -- 0.0529 -- 35 84 -- --
47.7 0.322 3.01 -- 0.284 0.297 -- -- 0.0799 15.6 20.76 204 -- --
49.39 0.328 3.01 -0.146 -- -- -- -- 0.0469 -- -- -- -- --
48.9 0.327 3.01 -- 0.136 -- -- -- 0.0642 20.7 -- -- -- --
49.22 0.327 3.01 -- -- 0.116 -- -- 0.0689 -- 35 88 -- --
49.95 0.33 3.01 -- -- -- -- -- 0.0631 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 44.10 radiation 1.0 90 < th dose dependent rect. 12 11
6 44.16 radiation 1.0 90 < th dose independent rect. 12 11
14 44.37 radiation 1.0 270 < th dose independent rect. 13 1
16 44.37 radiation 1.0 270 < th dose dependent rect. 13 1
17 44.43 radiation 1.0 90 < th dose dependent sin 21 NA
19 44.46 atmosphere 1015.0 30 < th dose independent rect. 23 20
20 44.47 radiation 1.0 270 < th dose independent rect. 10 4
21 44.47 radiation 1.0 270 < th dose dependent rect. 10 4
24 44.48 radiation 30.0 90 < th dose dependent rect. 12 11
26 44.49 radiation 1.0 90 > th dose independent rect. 9 20
31 44.51 radiation 1.0 90 > th dose independent rect. 9 10
47 44.57 radiation 1.0 90 > th dose independent sin 21 NA
48 44.58 radiation 1.0 90 < th dose independent sin 21 NA
49 44.58 atmosphere 1015.0 30 < th dose independent rect. 23 7
63 44.63 radiation 1.0 270 < th dose independent rect. 11 9
67 44.67 radiation 1.0 270 < th dose dependent rect. 11 9
82 44.75 radiation 1.0 270 > th dose independent rect. 7 11
86 44.76 radiation 20.0 270 < th dose dependent rect. 11 20
117 44.88 humidity 90.0 270 > th dose dependent rect. 11 2
119 44.90 humidity 90.0 270 > th dose independent rect. 11 2
145 44.95 radiation 20.0 90 < th dose independent rect. 12 11
146 44.95 radiation 20.0 4320 < th dose dependent rect. 18 11
152 44.96 radiation 40.0 4320 < th dose dependent rect. 24 5
156 44.97 humidity 60.0 14400 > th dose independent rect. 24 7
172 45.01 wind 7.0 720 < th dose independent rect. 14 1
176 45.02 radiation 30.0 4320 < th dose dependent rect. 18 2
180 45.03 atmosphere 1015.0 270 < th dose independent rect. 20 22
183 45.03 temperature 15.0 30 > th dose dependent rect. 19 4
191 45.06 wind 7.0 720 > th dose independent rect. 13 1
197 45.08 radiation 10.0 4320 < th dose dependent rect. 18 9
219 45.11 temperature 20.0 30 > th dose independent rect. 19 4
228 45.13 radiation 1.0 4320 < th dose independent rect. 24 5
249 45.15 humidity 90.0 30 < th dose independent rect. 19 4
256 45.16 wind 5.0 720 > th dose dependent rect. 13 1
258 45.17 radiation 1.0 10 < th dose independent rect. 13 1
272 45.17 radiation 1.0 10 < th dose dependent rect. 13 1
287 45.18 atmosphere 1015.0 270 < th dose independent rect. 20 7
288 45.18 humidity 60.0 14400 > th dose independent rect. 19 11
296 45.19 atmosphere 1015.0 30 < th dose independent rect. 23 14
325 45.22 atmosphere 1015.0 30 < th dose independent rect. 23 3
346 45.24 wind 1.0 43200 > th dose independent rect. 20 1
350 45.24 temperature 20.0 30 > th dose independent rect. 6 17
370 45.26 humidity 60.0 14400 > th dose independent rect. 22 9
372 45.26 radiation 10.0 270 < th dose independent rect. 11 20
379 45.27 atmosphere 1015.0 10 < th dose independent rect. 23 23
383 45.28 humidity 60.0 14400 < th dose independent rect. 19 3
384 45.28 wind 1.0 30 > th dose independent rect. 19 4
387 45.28 atmosphere 1015.0 270 < th dose independent rect. 21 5
390 45.28 humidity 60.0 14400 > th dose independent rect. 19 8
398 45.28 wind 1.0 270 > th dose dependent rect. 19 1
405 45.30 humidity 60.0 14400 > th dose independent rect. 20 4
406 45.30 humidity 80.0 90 > th dose independent rect. 23 6
411 45.30 temperature 25.0 30 > th dose dependent rect. 6 1
423 45.31 radiation 1.0 10 < th dose dependent rect. 13 10
430 45.32 wind 1.0 43200 < th dose independent rect. 20 1
446 45.33 humidity 60.0 14400 < th dose dependent rect. 19 12
475 45.35 radiation 20.0 270 < th dose dependent rect. 1 22
485 45.36 humidity 90.0 90 < th dose independent rect. 2 21
488 45.36 humidity 60.0 14400 < th dose dependent rect. 19 3
498 45.36 radiation 1.0 4320 > th dose dependent rect. 18 11
506 45.37 wind 9.0 30 < th dose independent rect. 19 4
520 45.38 humidity 60.0 14400 > th dose independent rect. 19 1
523 45.38 temperature 10.0 30 > th dose independent rect. 19 4
525 45.38 temperature 30.0 30 < th dose independent rect. 19 4
526 45.38 humidity 50.0 30 > th dose independent rect. 19 4
528 45.38 atmosphere 995.0 30 > th dose independent rect. 19 4
529 45.38 atmosphere 1010.0 30 < th dose independent rect. 19 4
531 45.38 radiation 1.0 30 < th dose independent rect. 19 4
536 45.38 wind 7.0 720 < th dose independent rect. 13 6
543 45.38 temperature 10.0 30 > th dose independent rect. 23 20
544 45.38 atmosphere 995.0 30 > th dose independent rect. 23 20
547 45.38 radiation 1.0 30 < th dose dependent rect. 19 4
555 45.38 wind 9.0 270 < th dose dependent rect. 13 13
557 45.38 humidity 50.0 14400 < th dose dependent rect. 17 18
560 45.39 atmosphere 1015.0 270 < th dose independent rect. 23 1
561 45.39 precipitation 0.1 30 < th dose independent rect. 19 4
568 45.39 precipitation 0.1 30 < th dose dependent rect. 19 4
575 45.40 atmosphere 1010.0 30 < th dose independent rect. 6 1
590 45.41 wind 7.0 270 < th dose independent rect. 14 12
591 45.41 radiation 30.0 14400 < th dose independent rect. 17 13
592 45.41 wind 9.0 30 < th dose independent rect. 23 20
593 45.41 precipitation 0.1 30 < th dose independent rect. 23 20
594 45.41 radiation 40.0 43200 < th dose dependent rect. 23 1
595 45.41 radiation 1.0 90 < th dose dependent rect. 23 12
597 45.41 precipitation 0.1 30 < th dose dependent rect. 23 20
613 45.42 radiation 1.0 90 < th dose dependent rect. 23 9
621 45.43 radiation 10.0 30 < th dose independent rect. 6 1
633 45.43 radiation 1.0 4320 > th dose dependent rect. 18 1
654 45.44 wind 3.0 270 > th dose independent rect. 19 1
663 45.44 wind 1.0 10 > th dose independent rect. 6 17
669 45.44 radiation 20.0 30 < th dose dependent rect. 23 7
675 45.45 temperature 20.0 30 > th dose independent rect. 19 1
680 45.45 radiation 1.0 4320 < th dose independent rect. 22 7
682 45.45 atmosphere 995.0 30 > th dose dependent rect. 19 4
683 45.45 humidity 90.0 30 < th dose dependent rect. 19 5
694 45.46 radiation 1.0 90 < th dose independent rect. 23 12
697 45.46 atmosphere 1015.0 30 < th dose independent rect. 23 16
700 45.46 radiation 10.0 4320 < th dose dependent rect. 22 7
704 45.47 temperature 10.0 1440 > th dose independent rect. 24 7
707 45.47 temperature 30.0 1440 < th dose independent rect. 24 7
711 45.47 humidity 50.0 1440 > th dose independent rect. 24 7
716 45.47 atmosphere 995.0 1440 > th dose independent rect. 24 7
717 45.47 radiation 40.0 1440 < th dose independent rect. 24 7
722 45.47 radiation 1.0 90 < th dose independent rect. 23 9
725 45.47 temperature 10.0 1440 > th dose independent rect. 7 17
731 45.47 temperature 20.0 30 > th dose dependent rect. 19 1
741 45.48 radiation 20.0 43200 < th dose independent rect. 24 6
742 45.48 temperature 10.0 30 > th dose independent rect. 23 7
743 45.48 temperature 30.0 30 < th dose independent rect. 23 7
744 45.48 humidity 50.0 30 > th dose independent rect. 23 7
748 45.48 atmosphere 995.0 30 > th dose independent rect. 23 7
751 45.48 radiation 20.0 30 < th dose independent rect. 23 7
766 45.48 temperature 10.0 30 > th dose independent rect. 6 17
768 45.48 atmosphere 1015.0 30 < th dose independent rect. 6 17
776 45.48 humidity 50.0 30 > th dose dependent rect. 23 7
780 45.48 atmosphere 995.0 30 > th dose dependent rect. 19 14
783 45.48 radiation 20.0 270 < th dose dependent rect. 2 19
785 45.49 wind 9.0 30 < th dose independent rect. 23 7
790 45.49 wind 9.0 30 < th dose independent rect. 6 17
791 45.49 precipitation 0.1 10 < th dose independent rect. 6 17
801 45.49 precipitation 0.1 10 < th dose dependent rect. 6 17
805 45.50 radiation 30.0 14400 < th dose independent rect. 17 3
810 45.50 precipitation 0.1 30 < th dose independent rect. 23 7
815 45.50 precipitation 0.1 30 < th dose dependent rect. 23 7
821 45.51 temperature 15.0 270 > th dose independent rect. 19 1
834 45.51 radiation 40.0 14400 < th dose independent rect. 16 8
837 45.51 humidity 90.0 30 < th dose independent rect. 6 17
841 45.51 wind 3.0 30 > th dose dependent rect. 6 1
842 45.51 temperature 10.0 270 > th dose dependent rect. 19 1
908 45.54 wind 9.0 1440 < th dose independent rect. 23 1
910 45.54 temperature 10.0 1440 > th dose independent rect. 23 1
913 45.54 temperature 30.0 1440 < th dose independent rect. 23 1
917 45.54 humidity 60.0 14400 > th dose independent rect. 7 1
918 45.54 humidity 50.0 1440 > th dose independent rect. 23 1
928 45.54 atmosphere 995.0 1440 > th dose independent rect. 23 1
929 45.54 radiation 1.0 1440 < th dose independent rect. 23 1
952 45.54 temperature 10.0 1440 > th dose independent rect. 24 23
955 45.54 radiation 1.0 1440 < th dose dependent rect. 23 1
963 45.54 atmosphere 1015.0 10 < th dose dependent rect. 23 7
971 45.55 temperature 25.0 30 > th dose independent rect. 22 1
977 45.55 radiation 30.0 14400 < th dose independent rect. 17 10
979 45.55 atmosphere 995.0 270 > th dose dependent rect. 19 1
981 45.55 radiation 10.0 43200 < th dose dependent rect. 20 4
997 45.56 wind 1.0 90 > th dose independent rect. 5 18