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Os11g0526900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, uncharacterized transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.6 (0.0247) R2 : 0.637
β1 : -1.29 (0.0903) R2dD : 0.167 R2D : 0.15
β2 : -- (--) R2dC : -- R2C : --
β3 : -1.69 (0.0692) R2dE : 0.476 R2E : 0.474
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.142 (0.0527) R2dN8 : 0.00781 R2N8 : -0.00314
σ : 0.461
deviance : 98.09
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 1.49
memory length : 257
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 22.9
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
92.86 0.453 8.58 -1.33 0.393 -2.04 2.04 -1.56 -0.132 5.24 1.448 269 23.2 --
94.94 0.454 8.6 -1.29 0.361 -1.93 0.84 -- -0.116 4.78 2.15 266 23.7 --
95.35 0.455 8.58 -1.28 0.383 -1.96 -- 0.346 -0.125 6.08 2.343 268 23.4 --
95.54 0.455 8.58 -1.28 0.41 -1.99 -- -- -0.132 6.28 2.229 270 23.3 --
98.48 0.462 8.62 -1.25 -- -1.71 -- 0.339 -0.161 -- 2.098 253 23.2 --
139.3 0.553 8.61 -1.23 1.27 -- -0.497 -- -0.14 16.4 -- -- -- --
139.98 0.554 8.61 -1.23 1.27 -- -- -- -0.143 16.4 -- -- -- --
98.09 0.461 8.6 -1.29 -- -1.69 -- -- -0.142 -- 1.49 257 22.9 --
136.22 0.544 8.55 -- 0.383 -1.93 -- -- -0.0127 6.05 10 205 23.7 --
226.4 0.703 8.6 -1.28 -- -- -- -- -0.177 -- -- -- -- --
180.13 0.628 8.58 -- 1.29 -- -- -- -0.00558 16.3 -- -- -- --
138.06 0.547 8.56 -- -- -1.65 -- -- -0.013 -- 10 177 23.3 --
269.91 0.767 8.57 -- -- -- -- -- -0.0341 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 84.48 precipitation 0.1 270 < th dose independent rect. 1 5
2 84.48 precipitation 0.1 270 < th dose dependent rect. 1 5
3 85.09 wind 7.0 270 < th dose independent rect. 1 5
5 85.09 temperature 10.0 270 > th dose independent rect. 1 5
7 85.09 temperature 30.0 270 < th dose independent rect. 1 5
8 85.09 humidity 50.0 270 > th dose independent rect. 1 5
11 85.09 atmosphere 995.0 270 > th dose independent rect. 1 5
12 85.09 atmosphere 1015.0 270 < th dose independent rect. 1 5
13 85.09 radiation 20.0 270 < th dose independent rect. 1 5
16 85.09 temperature 10.0 270 > th dose independent rect. 6 19
17 85.20 wind 9.0 270 < th dose independent rect. 6 19
18 85.26 radiation 40.0 270 < th dose dependent rect. 1 5
22 85.86 precipitation 0.1 270 < th dose independent rect. 2 3
23 85.86 precipitation 0.1 270 < th dose dependent rect. 2 3
28 86.42 wind 9.0 270 < th dose independent rect. 2 3
29 86.42 temperature 10.0 270 > th dose independent rect. 2 3
31 86.42 temperature 30.0 270 < th dose independent rect. 2 3
32 86.42 humidity 50.0 270 > th dose independent rect. 2 3
35 86.42 atmosphere 995.0 270 > th dose independent rect. 2 3
36 86.42 atmosphere 1010.0 270 < th dose independent rect. 2 3
38 86.42 radiation 20.0 270 < th dose independent rect. 2 3
41 86.42 temperature 10.0 270 > th dose independent rect. 5 21
42 86.44 radiation 40.0 270 < th dose dependent rect. 2 3
46 86.51 radiation 1.0 270 < th dose independent rect. 2 3
50 86.65 wind 9.0 270 < th dose independent rect. 5 21
64 87.30 precipitation 0.1 270 < th dose independent rect. 6 19
65 87.30 precipitation 0.1 270 < th dose dependent rect. 6 19
66 87.40 humidity 50.0 270 > th dose independent rect. 6 19
69 87.67 wind 9.0 90 < th dose dependent rect. 3 4
81 88.28 humidity 50.0 270 > th dose dependent rect. 1 5
86 88.45 humidity 50.0 90 > th dose dependent rect. 3 4
112 88.80 wind 9.0 270 < th dose dependent rect. 1 5
113 88.84 radiation 1.0 270 < th dose independent rect. 1 8
118 89.10 atmosphere 995.0 90 > th dose independent rect. 7 20
128 89.35 precipitation 0.1 270 < th dose independent rect. 5 21
129 89.35 precipitation 0.1 270 < th dose dependent rect. 5 21
167 90.16 atmosphere 1015.0 90 < th dose dependent rect. 3 4
184 90.24 humidity 50.0 270 > th dose independent rect. 5 21
195 90.32 temperature 30.0 90 < th dose dependent rect. 3 4
212 90.90 precipitation 0.1 270 < th dose independent rect. 3 1
213 90.90 precipitation 0.1 270 < th dose dependent rect. 3 1
223 91.21 temperature 10.0 270 > th dose dependent rect. 6 5
256 91.84 temperature 15.0 270 > th dose independent rect. 11 19
257 91.85 wind 7.0 270 < th dose independent rect. 3 1
260 91.88 wind 9.0 90 < th dose dependent rect. 7 20
263 91.91 temperature 10.0 270 > th dose independent rect. 3 1
265 91.91 temperature 30.0 270 < th dose independent rect. 3 1
266 91.91 humidity 50.0 270 > th dose independent rect. 3 1
269 91.91 atmosphere 995.0 270 > th dose independent rect. 3 1
270 91.91 atmosphere 1010.0 270 < th dose independent rect. 3 1
272 91.91 radiation 1.0 270 < th dose independent rect. 3 1
277 91.91 temperature 10.0 270 > th dose independent rect. 4 23
278 91.91 radiation 1.0 270 < th dose dependent rect. 3 1
288 92.06 wind 1.0 270 > th dose independent rect. 1 5
293 92.09 wind 7.0 270 < th dose independent rect. 6 5
297 92.15 precipitation 0.1 270 < th dose independent rect. 11 19
298 92.15 precipitation 0.1 270 < th dose dependent rect. 11 19
300 92.21 atmosphere 995.0 270 > th dose independent rect. 5 21
334 92.55 radiation 20.0 10 < th dose independent rect. 3 5
362 92.76 temperature 10.0 270 > th dose dependent rect. 2 3
366 92.88 wind 9.0 270 < th dose dependent rect. 6 5
371 92.97 precipitation 0.1 10 < th dose independent rect. 3 4
372 92.97 precipitation 0.1 10 < th dose dependent rect. 3 4
374 93.02 radiation 1.0 270 < th dose dependent sin 5 NA
375 93.05 humidity 50.0 270 > th dose independent rect. 6 5
376 93.05 temperature 10.0 270 > th dose dependent rect. 1 5
381 93.10 precipitation 0.1 270 < th dose independent rect. 6 5
383 93.10 precipitation 0.1 270 < th dose dependent rect. 6 5
385 93.18 temperature 10.0 270 > th dose independent rect. 6 5
386 93.18 atmosphere 995.0 270 > th dose independent rect. 6 5
387 93.18 atmosphere 1015.0 270 < th dose independent rect. 6 5
393 93.25 wind 1.0 270 > th dose independent rect. 2 3
398 93.41 atmosphere 1015.0 270 < th dose independent rect. 6 19
402 93.48 wind 9.0 270 < th dose dependent rect. 3 1
410 93.66 radiation 40.0 270 < th dose dependent rect. 15 10
414 93.75 radiation 1.0 270 < th dose independent sin 6 NA
418 93.79 humidity 50.0 270 > th dose dependent rect. 3 1
419 93.80 radiation 1.0 270 > th dose independent rect. 6 5
423 93.87 temperature 10.0 10 > th dose dependent rect. 7 7
430 93.95 wind 9.0 270 < th dose dependent rect. 6 7
436 94.04 wind 9.0 270 < th dose independent rect. 11 19
439 94.07 temperature 10.0 270 > th dose dependent rect. 7 2
442 94.11 radiation 1.0 270 < th dose independent rect. 15 10
443 94.13 wind 7.0 10 < th dose independent rect. 3 4
451 94.29 humidity 50.0 270 > th dose dependent rect. 6 19
453 94.30 temperature 15.0 90 > th dose independent rect. 14 17
454 94.32 radiation 10.0 270 < th dose dependent rect. 15 10
455 94.33 atmosphere 1015.0 270 < th dose dependent rect. 1 5
471 94.54 temperature 10.0 10 > th dose independent rect. 3 4
473 94.54 temperature 30.0 10 < th dose independent rect. 3 4
474 94.54 humidity 50.0 10 > th dose independent rect. 3 4
477 94.54 atmosphere 995.0 10 > th dose independent rect. 3 4
478 94.54 atmosphere 1015.0 10 < th dose independent rect. 3 4
482 94.54 temperature 10.0 10 > th dose independent rect. 7 20
523 94.70 temperature 15.0 10 > th dose independent rect. 14 17
531 94.76 radiation 20.0 90 < th dose dependent rect. 3 8
538 94.82 temperature 15.0 270 > th dose independent rect. 11 10
544 94.85 precipitation 0.1 270 < th dose independent rect. 13 17
545 94.85 precipitation 0.1 270 < th dose dependent rect. 13 17
580 95.11 precipitation 0.1 10 < th dose independent rect. 14 17
581 95.11 precipitation 0.1 10 < th dose dependent rect. 14 17
587 95.18 temperature 10.0 10 > th dose dependent rect. 7 5
599 95.30 precipitation 0.1 270 < th dose independent rect. 11 10
600 95.30 precipitation 0.1 270 < th dose dependent rect. 11 10
618 95.50 humidity 70.0 270 > th dose independent rect. 6 19
650 95.59 radiation 40.0 90 < th dose independent rect. 13 18
651 95.59 atmosphere 995.0 10 > th dose independent rect. 7 20
658 95.64 wind 1.0 270 > th dose independent rect. 6 19
660 95.66 wind 7.0 270 < th dose independent rect. 21 14
667 95.72 precipitation 0.1 10 < th dose independent rect. 7 20
669 95.72 precipitation 0.1 10 < th dose dependent rect. 7 20
680 95.84 atmosphere 1015.0 10 < th dose dependent rect. 4 3
686 95.89 precipitation 0.1 270 < th dose independent rect. 6 7
687 95.89 precipitation 0.1 270 < th dose dependent rect. 6 7
697 95.97 temperature 10.0 270 > th dose independent rect. 6 7
698 95.97 atmosphere 995.0 270 > th dose independent rect. 6 7
699 95.97 atmosphere 1015.0 270 < th dose independent rect. 6 7
704 96.01 humidity 50.0 270 > th dose independent rect. 6 7
725 96.07 radiation 1.0 270 > th dose independent sin 5 NA
743 96.21 humidity 50.0 270 > th dose independent rect. 21 14
749 96.25 radiation 40.0 10 < th dose dependent rect. 3 5
785 96.33 temperature 10.0 270 > th dose independent rect. 21 14
786 96.33 atmosphere 995.0 270 > th dose independent rect. 21 14
810 96.38 wind 9.0 270 < th dose independent rect. 13 17
854 96.51 wind 1.0 270 > th dose independent rect. 3 1
870 96.61 atmosphere 995.0 270 > th dose independent rect. 11 19
882 96.68 temperature 10.0 270 > th dose dependent rect. 3 1
893 96.72 wind 9.0 10 < th dose independent rect. 14 17
905 96.78 precipitation 0.1 10 < th dose independent rect. 7 7
906 96.78 precipitation 0.1 10 < th dose dependent rect. 7 7
915 96.83 atmosphere 1015.0 270 < th dose dependent rect. 3 1
918 96.86 wind 9.0 10 < th dose independent rect. 7 7
920 96.86 radiation 40.0 10 < th dose independent rect. 14 17
926 96.89 atmosphere 1015.0 270 < th dose independent rect. 11 10
928 96.89 temperature 10.0 10 > th dose dependent rect. 3 4
932 96.91 temperature 10.0 10 > th dose independent rect. 7 7
934 96.91 atmosphere 995.0 10 > th dose independent rect. 7 7
935 96.91 atmosphere 1015.0 10 < th dose independent rect. 7 7
951 96.96 wind 9.0 1440 < th dose independent rect. 4 4
952 96.96 temperature 10.0 1440 > th dose independent rect. 4 4
955 96.96 temperature 30.0 1440 < th dose independent rect. 4 4
959 96.96 humidity 50.0 1440 > th dose independent rect. 4 4
964 96.96 atmosphere 995.0 1440 > th dose independent rect. 4 4
965 96.96 atmosphere 1015.0 1440 < th dose independent rect. 4 4
966 96.96 temperature 10.0 1440 > th dose independent rect. 8 20
993 97.14 wind 9.0 270 < th dose dependent rect. 7 2