Os11g0526000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os11g0526000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 106.63 | 0.485 | 7.34 | 2.01 | 0.697 | 1.04 | -1.27 | -6.85 | -0.305 | 1.36 | 30 | 4331 | -- | -- |
| 113.04 | 0.495 | 7.58 | 1.37 | 0.691 | 2.16 | -0.982 | -- | -0.628 | 2.03 | 17.14 | 23820 | -- | -- |
| 111.83 | 0.493 | 7.34 | 1.95 | 0.702 | 1.06 | -- | -6.42 | -0.299 | 2 | 28.11 | 4466 | -- | -- |
| 115.22 | 0.5 | 7.58 | 1.75 | 0.692 | 2.53 | -- | -- | -0.523 | 1.88 | 17.34 | 24376 | -- | -- |
| 140.98 | 0.553 | 7.33 | 2.02 | -- | 0.979 | -- | -6.82 | -0.296 | -- | 29.41 | 4565 | -- | -- |
| 194.13 | 0.653 | 7.67 | -0.246 | 0.647 | -- | -1.22 | -- | -1.05 | 1.12 | -- | -- | -- | -- |
| 199.1 | 0.661 | 7.67 | -0.206 | 0.673 | -- | -- | -- | -1.04 | 1.98 | -- | -- | -- | -- |
| 143.55 | 0.558 | 7.53 | 1.79 | -- | 2.54 | -- | -- | -0.46 | -- | 17.43 | 24648 | -- | -- |
| 150.17 | 0.571 | 7.64 | -- | 0.654 | 1.66 | -- | -- | -0.825 | 0.776 | 13.79 | 37891 | -- | -- |
| 226.34 | 0.703 | 7.66 | -0.178 | -- | -- | -- | -- | -1.03 | -- | -- | -- | -- | -- |
| 200.22 | 0.662 | 7.66 | -- | 0.669 | -- | -- | -- | -1.02 | 1.97 | -- | -- | -- | -- |
| 173.92 | 0.614 | 7.62 | -- | -- | 1.44 | -- | -- | -0.857 | -- | 14.7 | 23293 | -- | -- |
| 227.18 | 0.704 | 7.66 | -- | -- | -- | -- | -- | -1.01 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 101.24 | wind | 7.0 | 43200 | < th | dose independent | rect. | 21 | 8 |
| 2 | 101.24 | temperature | 25.0 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 3 | 101.32 | wind | 7.0 | 43200 | > th | dose independent | rect. | 21 | 8 |
| 5 | 101.33 | wind | 9.0 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 9 | 101.50 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 21 | 8 |
| 19 | 101.92 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 11 | 3 |
| 23 | 101.95 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 9 | 6 |
| 26 | 102.05 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 21 | 3 |
| 27 | 102.05 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 21 | 5 |
| 28 | 102.10 | temperature | 30.0 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 50 | 102.32 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 6 | 5 |
| 52 | 102.32 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 6 | 5 |
| 62 | 102.41 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 22 | 1 |
| 86 | 102.58 | wind | 9.0 | 43200 | > th | dose independent | rect. | 21 | 3 |
| 91 | 102.60 | temperature | 25.0 | 43200 | < th | dose dependent | sin | 2 | NA |
| 94 | 102.61 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 6 | 4 |
| 107 | 102.64 | temperature | 25.0 | 43200 | < th | dose dependent | rect. | 6 | 18 |
| 108 | 102.65 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 6 | 4 |
| 139 | 102.72 | temperature | 25.0 | 43200 | < th | dose dependent | rect. | 19 | 1 |
| 152 | 102.73 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 158 | 102.74 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 203 | 102.81 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 5 | 7 |
| 211 | 102.82 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 21 | 13 |
| 217 | 102.83 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 6 | 5 |
| 218 | 102.83 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 5 | 6 |
| 230 | 102.85 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 11 | 3 |
| 248 | 102.87 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 6 | 5 |
| 258 | 102.88 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 6 | 7 |
| 267 | 102.89 | temperature | 25.0 | 43200 | < th | dose dependent | no | NA | NA |
| 275 | 102.89 | temperature | 25.0 | 43200 | < th | dose dependent | rect. | 18 | 23 |
| 284 | 102.90 | temperature | 25.0 | 43200 | < th | dose dependent | rect. | 14 | 23 |
| 336 | 102.97 | wind | 7.0 | 43200 | < th | dose independent | rect. | 22 | 2 |
| 338 | 102.97 | temperature | 25.0 | 43200 | < th | dose dependent | sin | 18 | NA |
| 359 | 102.99 | temperature | 25.0 | 43200 | < th | dose dependent | rect. | 15 | 9 |
| 424 | 103.06 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 4 | 12 |
| 426 | 103.06 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 15 | 1 |
| 431 | 103.07 | temperature | 20.0 | 43200 | > th | dose independent | sin | 2 | NA |
| 440 | 103.08 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 4 | 11 |
| 457 | 103.10 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 18 | 15 |
| 462 | 103.11 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 472 | 103.12 | temperature | 20.0 | 43200 | < th | dose independent | sin | 2 | NA |
| 475 | 103.12 | wind | 7.0 | 43200 | < th | dose independent | rect. | 21 | 16 |
| 476 | 103.12 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 3 | 17 |
| 477 | 103.12 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 3 | 17 |
| 580 | 103.26 | radiation | 30.0 | 14400 | < th | dose independent | rect. | 2 | 5 |
| 601 | 103.28 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 673 | 103.39 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 18 | 7 |
| 682 | 103.40 | wind | 7.0 | 43200 | > th | dose independent | rect. | 21 | 16 |
| 904 | 103.69 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 18 | 8 |
| 932 | 103.72 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 11 | 6 |
| 974 | 103.77 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 10 | 4 |
| 975 | 103.77 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 21 | 14 |
| 980 | 103.77 | temperature | 10.0 | 43200 | > th | dose dependent | rect. | 11 | 1 |