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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0525500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.91 (0.0271) R2 : 0.0137
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.143 (0.057) R2dN8 : 0.0177 R2N8 : 0.0137
σ : 0.509
deviance : 119.15
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
111.08 0.495 2.88 0.15 0.115 -0.352 0.0123 4.92 0.161 11.6 0.9611 40 -- --
116.96 0.508 2.9 0.0529 0.117 0.372 -0.209 -- 0.163 13 0.8001 44 -- --
111.03 0.491 2.88 0.149 0.119 -0.363 -- 5.06 0.159 11.5 0.8771 38 -- --
117.13 0.507 2.9 0.0442 0.118 0.389 -- -- 0.162 12.6 0.8 40 -- --
111.81 0.492 2.88 0.153 -- -0.403 -- 5.4 0.158 -- 0.9 43 -- --
118.17 0.51 2.9 0.0776 0.0928 -- -0.277 -- 0.154 12.9 -- -- -- --
118.46 0.51 2.9 0.0668 0.0956 -- -- -- 0.152 11.9 -- -- -- --
117.98 0.508 2.9 0.043 -- 0.339 -- -- 0.159 -- 0.8 40 -- --
117.18 0.507 2.9 -- 0.118 0.396 -- -- 0.157 12.6 0.8 40 -- --
119.04 0.51 2.91 0.064 -- -- -- -- 0.15 -- -- -- -- --
118.58 0.509 2.9 -- 0.0948 -- -- -- 0.144 11.8 -- -- -- --
118.03 0.508 2.9 -- -- 0.347 -- -- 0.154 -- 0.8 40 -- --
119.15 0.509 2.91 -- -- -- -- -- 0.143 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 104.37 temperature 20.0 90 < th dose independent rect. 22 1
2 104.83 temperature 20.0 10 < th dose dependent rect. 24 1
23 106.43 temperature 20.0 10 < th dose dependent rect. 17 8
27 106.47 temperature 20.0 10 < th dose dependent rect. 13 12
30 106.50 temperature 20.0 10 < th dose dependent rect. 11 14
181 108.49 temperature 20.0 10 < th dose dependent sin 18 NA
226 109.14 temperature 20.0 90 < th dose independent rect. 16 8
229 109.17 atmosphere 1005.0 30 > th dose dependent rect. 23 1
236 109.24 temperature 20.0 90 < th dose independent rect. 13 11
241 109.32 temperature 20.0 90 < th dose independent rect. 10 14
242 109.32 atmosphere 1015.0 30 < th dose independent rect. 15 23
279 109.59 wind 1.0 10 < th dose dependent rect. 11 13
281 109.61 wind 1.0 10 < th dose dependent sin 19 NA
290 109.66 wind 1.0 10 < th dose independent rect. 11 14
293 109.68 wind 1.0 10 < th dose dependent rect. 6 18
300 109.70 wind 1.0 10 < th dose dependent rect. 13 11
340 109.98 wind 1.0 90 < th dose dependent rect. 22 1
363 110.12 wind 1.0 10 < th dose independent rect. 23 1
367 110.12 wind 1.0 10 < th dose dependent rect. 23 1
371 110.12 atmosphere 1005.0 30 > th dose dependent rect. 12 12
384 110.21 atmosphere 1005.0 30 > th dose dependent rect. 18 6
417 110.38 wind 1.0 90 < th dose independent rect. 10 18
421 110.39 atmosphere 1015.0 270 < th dose independent rect. 12 23
424 110.39 wind 1.0 90 < th dose dependent rect. 10 18
428 110.41 wind 1.0 10 < th dose independent rect. 6 19
450 110.48 atmosphere 1015.0 720 < th dose independent rect. 13 14
473 110.52 precipitation 0.1 4320 > th dose independent rect. 6 1
476 110.52 precipitation 0.1 4320 > th dose dependent rect. 6 1
496 110.56 precipitation 0.1 1440 > th dose independent rect. 8 5
499 110.56 precipitation 0.1 1440 > th dose dependent rect. 8 5
503 110.57 wind 1.0 10 < th dose independent sin 18 NA
511 110.58 wind 1.0 90 < th dose independent rect. 22 1
516 110.60 temperature 20.0 90 > th dose independent rect. 15 12
550 110.69 atmosphere 1005.0 270 > th dose dependent rect. 20 1
557 110.69 wind 1.0 10 < th dose dependent rect. 2 23
580 110.73 atmosphere 1015.0 270 < th dose independent rect. 21 23
590 110.75 wind 1.0 90 < th dose independent rect. 10 14
609 110.78 atmosphere 1015.0 720 < th dose independent rect. 5 22
637 110.85 wind 3.0 1440 < th dose dependent rect. 11 1
648 110.88 atmosphere 1015.0 720 < th dose independent rect. 15 10
672 110.94 atmosphere 1015.0 720 < th dose independent sin 2 NA
678 110.96 wind 1.0 90 < th dose independent sin 18 NA
686 110.98 atmosphere 1015.0 720 > th dose independent rect. 24 2
728 111.02 atmosphere 1015.0 720 > th dose dependent rect. 24 1
772 111.07 atmosphere 1015.0 720 < th dose independent rect. 15 16
778 111.08 atmosphere 1015.0 720 > th dose independent sin 3 NA
780 111.08 atmosphere 1015.0 720 > th dose dependent sin 3 NA
786 111.09 atmosphere 1015.0 90 < th dose independent rect. 23 23
817 111.11 wind 1.0 720 < th dose dependent rect. 23 1
830 111.13 wind 1.0 90 < th dose dependent rect. 22 6
890 111.21 precipitation 0.1 1440 > th dose independent rect. 8 2
891 111.21 precipitation 0.1 1440 > th dose dependent rect. 8 2
918 111.24 atmosphere 1015.0 720 < th dose independent rect. 15 18
926 111.26 atmosphere 1015.0 720 < th dose independent rect. 15 12
959 111.30 radiation 1.0 4320 < th dose independent rect. 6 1
960 111.30 atmosphere 1015.0 720 < th dose independent rect. 19 8
970 111.31 wind 1.0 30 < th dose dependent rect. 22 18
992 111.34 atmosphere 1005.0 10 > th dose independent rect. 23 1