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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0522900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Peptidase S10, serine carboxypeptidase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.69 (0.0268) R2 : 5.23e-05
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.00871 (0.0564) R2dN8 : 6.76e-05 R2N8 : 5.23e-05
σ : 0.504
deviance : 116.63
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
111.81 0.497 2.71 -0.0418 0.2 0.234 0.297 0.758 -0.00911 20.6 1010 1729 -- --
113.49 0.496 2.69 0.0592 0.198 0.156 0.34 -- 0.011 20.4 1010 1616 -- --
112.09 0.493 2.71 -0.0508 0.199 0.24 -- 0.777 -0.00892 20.8 1010 1729 -- --
113.81 0.497 2.69 0.0511 0.198 0.159 -- -- 0.0113 20.8 1010 1625 -- --
114.31 0.498 2.7 -0.0474 -- 0.232 -- 0.761 -0.00898 -- 1010 1719 -- --
114.1 0.501 2.7 0.0282 0.198 -- 0.351 -- -0.00481 20.2 -- -- -- --
114.45 0.501 2.7 0.017 0.196 -- -- -- -0.0052 20.7 -- -- -- --
116.02 0.502 2.69 0.0475 -- 0.152 -- -- 0.0136 -- 1010 1516 -- --
113.87 0.497 2.69 -- 0.201 0.151 -- -- 0.00491 20.8 1010 1625 -- --
116.62 0.505 2.69 0.0165 -- -- -- -- -0.00688 -- -- -- -- --
114.46 0.5 2.7 -- 0.196 -- -- -- -0.00709 20.7 -- -- -- --
116.08 0.502 2.69 -- -- 0.147 -- -- 0.00373 -- 1010 1516 -- --
116.63 0.504 2.69 -- -- -- -- -- -0.00871 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 99.88 temperature 25.0 10 > th dose independent rect. 21 1
3 102.12 precipitation 0.1 10 > th dose independent rect. 7 11
7 102.12 precipitation 0.1 10 > th dose dependent rect. 7 11
11 102.21 humidity 90.0 10 > th dose independent rect. 17 1
14 102.21 precipitation 0.1 10 > th dose independent rect. 17 1
49 102.21 humidity 90.0 10 > th dose dependent rect. 17 1
52 102.21 precipitation 0.1 10 > th dose dependent rect. 17 1
121 106.16 temperature 25.0 10 > th dose dependent rect. 21 1
124 106.50 wind 3.0 10 < th dose dependent rect. 21 1
128 107.31 atmosphere 1005.0 90 < th dose dependent rect. 20 1
143 107.69 radiation 1.0 90 < th dose independent rect. 16 1
149 107.86 humidity 70.0 270 < th dose independent rect. 18 1
156 108.09 wind 1.0 10 < th dose independent rect. 22 1
161 108.24 humidity 90.0 10 > th dose dependent rect. 8 11
185 108.75 humidity 90.0 270 > th dose independent rect. 14 1
186 108.75 humidity 90.0 270 > th dose dependent rect. 14 1
188 108.76 wind 9.0 1440 > th dose dependent rect. 12 1
190 108.77 wind 3.0 10 > th dose independent rect. 3 1
193 108.77 wind 3.0 10 > th dose dependent rect. 3 1
194 108.77 wind 5.0 90 > th dose dependent rect. 3 1
208 108.80 humidity 70.0 30 < th dose independent rect. 19 1
224 108.84 radiation 10.0 10 > th dose dependent rect. 17 14
225 108.85 wind 9.0 1440 > th dose independent rect. 12 1
228 108.85 radiation 10.0 270 < th dose dependent rect. 14 1
231 108.92 humidity 70.0 10 < th dose dependent rect. 19 1
246 108.95 temperature 25.0 90 < th dose independent rect. 16 1
281 109.08 temperature 30.0 90 > th dose dependent rect. 18 1
296 109.09 temperature 30.0 90 > th dose independent rect. 18 1
329 109.24 humidity 70.0 270 < th dose dependent rect. 18 1
345 109.35 radiation 1.0 90 < th dose independent rect. 7 11
357 109.46 radiation 1.0 90 < th dose independent rect. 13 4
358 109.46 radiation 1.0 90 < th dose independent rect. 10 7
364 109.53 wind 5.0 10 > th dose dependent rect. 3 5
379 109.69 humidity 90.0 270 > th dose dependent rect. 12 4
392 109.76 humidity 90.0 270 > th dose independent rect. 12 4
393 109.77 wind 9.0 1440 > th dose independent rect. 12 4
397 109.79 temperature 25.0 90 < th dose dependent rect. 16 1
401 109.85 wind 9.0 720 > th dose dependent rect. 12 4
441 110.02 humidity 90.0 10 > th dose independent rect. 8 11
446 110.04 wind 7.0 10 > th dose independent rect. 21 8
458 110.04 wind 7.0 10 > th dose dependent rect. 21 8
491 110.13 wind 3.0 720 < th dose independent rect. 11 2
501 110.19 wind 3.0 720 < th dose dependent rect. 11 2
504 110.21 radiation 1.0 90 < th dose dependent rect. 7 11
509 110.27 wind 9.0 1440 < th dose independent rect. 12 2
521 110.32 humidity 80.0 270 > th dose dependent rect. 11 6
534 110.37 temperature 25.0 270 < th dose dependent rect. 14 1
543 110.43 precipitation 0.1 30 > th dose independent rect. 3 1
551 110.43 precipitation 0.1 30 > th dose dependent rect. 3 1
564 110.49 wind 1.0 720 < th dose independent rect. 13 2
572 110.51 radiation 10.0 10 > th dose independent rect. 17 14
584 110.61 radiation 1.0 90 < th dose dependent rect. 10 8
601 110.66 wind 9.0 1440 < th dose independent rect. 12 4
619 110.73 atmosphere 1010.0 1440 > th dose independent rect. 18 1
624 110.74 wind 9.0 720 > th dose independent rect. 15 1
631 110.78 atmosphere 1005.0 90 < th dose independent rect. 20 2
633 110.79 humidity 80.0 30 > th dose independent rect. 21 1
634 110.79 temperature 25.0 270 < th dose independent rect. 14 3
635 110.79 radiation 10.0 1440 < th dose dependent rect. 9 3
636 110.79 wind 3.0 30 < th dose dependent rect. 16 6
713 110.84 precipitation 0.1 90 > th dose independent rect. 23 5
716 110.84 precipitation 0.1 90 > th dose dependent rect. 23 5
723 110.87 atmosphere 1010.0 1440 < th dose independent rect. 18 1
744 110.90 wind 5.0 90 < th dose independent rect. 16 1
764 110.92 radiation 10.0 1440 < th dose dependent rect. 8 5
785 110.95 temperature 25.0 270 < th dose dependent rect. 14 3
811 111.00 atmosphere 1000.0 90 > th dose dependent rect. 16 1
834 111.05 precipitation 0.1 30 > th dose independent rect. 3 5
930 111.13 atmosphere 1005.0 90 > th dose independent rect. 16 1
932 111.13 wind 7.0 90 > th dose independent rect. 2 7
936 111.13 humidity 80.0 90 > th dose dependent rect. 6 12
960 111.18 radiation 1.0 90 > th dose independent rect. 8 22
978 111.21 wind 1.0 720 < th dose independent rect. 10 5
985 111.23 radiation 1.0 90 < th dose independent sin 22 NA
988 111.23 radiation 10.0 1440 < th dose independent rect. 9 3
989 111.23 humidity 70.0 30 > th dose independent rect. 19 12