Os11g0518900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os11g0518900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 64.85 | 0.378 | 10.4 | 1.81 | 0.647 | 0.793 | -0.516 | -0.709 | 0.679 | 15.7 | 20.04 | 1345 | -- | -- |
| 66.02 | 0.378 | 10.4 | 1.86 | 0.647 | 0.831 | -0.483 | -- | 0.7 | 15.5 | 20.01 | 1319 | -- | -- |
| 65.59 | 0.377 | 10.4 | 1.82 | 0.646 | 0.791 | -- | -0.608 | 0.688 | 15.8 | 20 | 1338 | -- | -- |
| 66.36 | 0.379 | 10.4 | 1.93 | 0.649 | 0.785 | -- | -- | 0.729 | 15.8 | 20.01 | 1327 | -- | -- |
| 70.01 | 0.39 | 10.4 | 1.93 | -- | 1.24 | -- | -0.649 | 0.672 | -- | 20.01 | 1984 | -- | -- |
| 87.42 | 0.438 | 10.4 | 2.17 | 0.579 | -- | -0.406 | -- | 0.949 | 16.4 | -- | -- | -- | -- |
| 87.79 | 0.439 | 10.4 | 2.16 | 0.58 | -- | -- | -- | 0.947 | 16.6 | -- | -- | -- | -- |
| 70.8 | 0.392 | 10.4 | 1.91 | -- | 1.22 | -- | -- | 0.668 | -- | 20 | 1984 | -- | -- |
| 163.37 | 0.595 | 10.4 | -- | 0.593 | 1.05 | -- | -- | 0.681 | 15.9 | 20 | 1353 | -- | -- |
| 105.71 | 0.48 | 10.4 | 2.14 | -- | -- | -- | -- | 0.932 | -- | -- | -- | -- | -- |
| 210.92 | 0.679 | 10.4 | -- | 0.54 | -- | -- | -- | 0.706 | 16.7 | -- | -- | -- | -- |
| 168.47 | 0.605 | 10.5 | -- | -- | 1.27 | -- | -- | 0.424 | -- | 20 | 1903 | -- | -- |
| 226.41 | 0.702 | 10.4 | -- | -- | -- | -- | -- | 0.695 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 61.00 | radiation | 10 | 43200 | > th | dose independent | rect. | 9 | 7 |
| 3 | 61.16 | radiation | 10 | 43200 | > th | dose independent | rect. | 9 | 4 |
| 8 | 61.55 | radiation | 10 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 10 | 61.63 | wind | 1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 19 | 62.22 | wind | 1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 26 | 62.71 | wind | 1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 27 | 62.73 | humidity | 90 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 43 | 63.05 | temperature | 30 | 43200 | > th | dose dependent | rect. | 17 | 2 |
| 77 | 63.49 | temperature | 30 | 43200 | < th | dose independent | rect. | 18 | 10 |
| 79 | 63.50 | temperature | 30 | 43200 | < th | dose independent | rect. | 18 | 12 |
| 89 | 63.68 | temperature | 30 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 90 | 63.70 | temperature | 30 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 92 | 63.72 | temperature | 30 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 96 | 63.83 | temperature | 30 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 110 | 63.84 | temperature | 30 | 43200 | < th | dose independent | rect. | 18 | 17 |
| 111 | 63.95 | temperature | 30 | 43200 | > th | dose independent | rect. | 18 | 17 |
| 146 | 64.06 | temperature | 30 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 151 | 64.11 | temperature | 30 | 43200 | > th | dose dependent | sin | 10 | NA |
| 152 | 64.12 | humidity | 90 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 158 | 64.21 | temperature | 30 | 43200 | < th | dose independent | rect. | 20 | 15 |
| 159 | 64.21 | humidity | 90 | 43200 | > th | dose dependent | rect. | 10 | 3 |
| 160 | 64.22 | temperature | 30 | 43200 | < th | dose independent | rect. | 22 | 13 |
| 165 | 64.23 | temperature | 30 | 43200 | < th | dose independent | rect. | 24 | 11 |
| 192 | 64.32 | temperature | 25 | 43200 | > th | dose dependent | rect. | 1 | 5 |
| 193 | 64.34 | temperature | 25 | 43200 | > th | dose dependent | rect. | 3 | 1 |
| 240 | 64.50 | wind | 5 | 43200 | > th | dose dependent | rect. | 21 | 9 |
| 283 | 64.61 | temperature | 25 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 312 | 64.67 | temperature | 25 | 43200 | > th | dose independent | rect. | 3 | 3 |
| 329 | 64.68 | temperature | 25 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 334 | 64.68 | humidity | 60 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 335 | 64.68 | humidity | 60 | 43200 | > th | dose dependent | rect. | 10 | 3 |
| 337 | 64.68 | wind | 5 | 43200 | > th | dose dependent | rect. | 21 | 7 |
| 338 | 64.69 | temperature | 25 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 344 | 64.72 | wind | 5 | 43200 | > th | dose independent | rect. | 21 | 9 |
| 351 | 64.75 | wind | 5 | 43200 | > th | dose dependent | rect. | 21 | 12 |
| 358 | 64.78 | temperature | 25 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 386 | 64.92 | radiation | 10 | 43200 | > th | dose independent | sin | 20 | NA |
| 387 | 64.92 | wind | 7 | 43200 | < th | dose independent | rect. | 21 | 13 |
| 390 | 64.93 | temperature | 25 | 43200 | < th | dose independent | rect. | 1 | 5 |
| 392 | 64.93 | wind | 5 | 43200 | > th | dose independent | rect. | 22 | 11 |
| 402 | 64.96 | wind | 5 | 43200 | < th | dose independent | rect. | 21 | 9 |
| 435 | 65.00 | temperature | 30 | 43200 | > th | dose dependent | no | NA | NA |
| 436 | 65.00 | temperature | 30 | 43200 | > th | dose dependent | rect. | 9 | 10 |
| 676 | 65.10 | humidity | 90 | 43200 | > th | dose independent | rect. | 10 | 4 |
| 696 | 65.12 | wind | 5 | 43200 | < th | dose independent | rect. | 22 | 11 |
| 743 | 65.16 | humidity | 60 | 43200 | > th | dose dependent | rect. | 9 | 6 |
| 781 | 65.20 | humidity | 80 | 43200 | > th | dose independent | rect. | 8 | 2 |
| 790 | 65.22 | radiation | 20 | 1440 | > th | dose independent | rect. | 12 | 21 |
| 840 | 65.28 | temperature | 30 | 43200 | > th | dose independent | sin | 9 | NA |
| 844 | 65.29 | temperature | 30 | 43200 | < th | dose independent | sin | 9 | NA |
| 853 | 65.30 | temperature | 30 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 854 | 65.31 | humidity | 70 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 868 | 65.34 | wind | 5 | 43200 | > th | dose independent | rect. | 22 | 16 |
| 954 | 65.53 | radiation | 10 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 957 | 65.54 | wind | 5 | 43200 | < th | dose independent | rect. | 22 | 16 |
| 964 | 65.57 | wind | 7 | 43200 | < th | dose independent | rect. | 21 | 5 |
| 975 | 65.59 | radiation | 30 | 1440 | < th | dose dependent | rect. | 12 | 21 |
| 983 | 65.62 | radiation | 1 | 43200 | < th | dose independent | rect. | 14 | 2 |
| 988 | 65.63 | wind | 7 | 43200 | > th | dose independent | rect. | 21 | 4 |
| 994 | 65.65 | humidity | 80 | 43200 | < th | dose independent | rect. | 8 | 3 |