Os11g0516400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, putative npRNA.
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Os11g0516400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, putative npRNA.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 87.59 | 0.44 | 8.06 | 1 | 1.25 | 0.52 | 0.255 | -0.455 | 0.132 | 0.559 | 20.5 | 594 | -- | -- |
| 88.29 | 0.438 | 8.05 | 1.07 | 1.22 | 0.558 | 0.237 | -- | 0.138 | 0.596 | 20.5 | 615 | -- | -- |
| 87.84 | 0.437 | 8.06 | 1.01 | 1.26 | 0.519 | -- | -0.416 | 0.135 | 0.586 | 20.52 | 545 | -- | -- |
| 88.34 | 0.438 | 8.05 | 1.07 | 1.25 | 0.573 | -- | -- | 0.144 | 0.598 | 20.5 | 602 | -- | -- |
| 175.61 | 0.617 | 8.1 | 0.917 | -- | 0.865 | -- | -0.567 | -0.0765 | -- | 24.71 | 950 | -- | -- |
| 97.81 | 0.464 | 8.02 | 1.29 | 1.29 | -- | 0.165 | -- | 0.274 | 0.388 | -- | -- | -- | -- |
| 97.93 | 0.463 | 8.02 | 1.28 | 1.29 | -- | -- | -- | 0.273 | 0.396 | -- | -- | -- | -- |
| 176.25 | 0.618 | 8.07 | 1.06 | -- | 0.819 | -- | -- | -0.00857 | -- | 24.8 | 953 | -- | -- |
| 95.25 | 0.455 | 8.1 | -- | 1.23 | 1.28 | -- | -- | -0.104 | 0.517 | 17.84 | 21948 | -- | -- |
| 202.71 | 0.665 | 8 | 1.32 | -- | -- | -- | -- | 0.294 | -- | -- | -- | -- | -- |
| 141.05 | 0.556 | 8.05 | -- | 1.31 | -- | -- | -- | 0.13 | 0.447 | -- | -- | -- | -- |
| 196.38 | 0.653 | 8.07 | -- | -- | 1.44 | -- | -- | -0.059 | -- | 19.5 | 918 | -- | -- |
| 248.87 | 0.736 | 8.03 | -- | -- | -- | -- | -- | 0.147 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 79.50 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 7 | 3 |
| 3 | 80.04 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 7 | 81.11 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 24 | 6 |
| 16 | 81.45 | wind | 1.0 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 20 | 81.53 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 5 | 2 |
| 25 | 81.70 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 31 | 81.79 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 37 | 81.91 | wind | 9.0 | 14400 | < th | dose independent | rect. | 9 | 2 |
| 42 | 82.03 | wind | 9.0 | 14400 | < th | dose independent | rect. | 7 | 4 |
| 62 | 82.25 | wind | 3.0 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 63 | 82.25 | wind | 9.0 | 14400 | > th | dose independent | rect. | 7 | 4 |
| 77 | 82.41 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 7 | 1 |
| 79 | 82.42 | wind | 3.0 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 86 | 82.47 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 91 | 82.50 | wind | 9.0 | 14400 | > th | dose independent | rect. | 9 | 2 |
| 99 | 82.57 | wind | 3.0 | 14400 | < th | dose independent | rect. | 21 | 9 |
| 104 | 82.59 | humidity | 90.0 | 4320 | > th | dose independent | rect. | 7 | 3 |
| 126 | 82.69 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 24 | 9 |
| 135 | 82.71 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 144 | 82.75 | wind | 3.0 | 14400 | < th | dose independent | rect. | 24 | 6 |
| 148 | 82.76 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 164 | 82.79 | wind | 3.0 | 14400 | > th | dose independent | rect. | 21 | 9 |
| 168 | 82.80 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 14 | 2 |
| 171 | 82.80 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 14 | 2 |
| 210 | 82.92 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 229 | 82.98 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 14 | 2 |
| 231 | 82.98 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 14 | 2 |
| 240 | 83.01 | wind | 3.0 | 14400 | < th | dose independent | rect. | 3 | 3 |
| 241 | 83.01 | wind | 3.0 | 14400 | > th | dose independent | rect. | 21 | 12 |
| 242 | 83.01 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 4 | 2 |
| 246 | 83.02 | wind | 3.0 | 14400 | < th | dose independent | rect. | 24 | 9 |
| 267 | 83.07 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 268 | 83.07 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 18 | 4 |
| 270 | 83.07 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 15 | 7 |
| 273 | 83.08 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 290 | 83.11 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 7 | 15 |
| 294 | 83.13 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 15 | 1 |
| 304 | 83.16 | wind | 3.0 | 14400 | > th | dose independent | rect. | 3 | 3 |
| 323 | 83.19 | wind | 3.0 | 14400 | > th | dose independent | rect. | 24 | 9 |
| 326 | 83.19 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 13 | 9 |
| 412 | 83.38 | wind | 1.0 | 14400 | < th | dose independent | rect. | 1 | 1 |
| 416 | 83.39 | wind | 3.0 | 14400 | > th | dose independent | rect. | 3 | 6 |
| 431 | 83.42 | wind | 5.0 | 14400 | < th | dose dependent | sin | 8 | NA |
| 445 | 83.46 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 18 | 4 |
| 506 | 83.57 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 9 | 6 |
| 513 | 83.59 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 531 | 83.62 | wind | 1.0 | 14400 | > th | dose dependent | sin | 8 | NA |
| 538 | 83.63 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 638 | 83.83 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 7 | 15 |
| 653 | 83.86 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 9 | 13 |
| 664 | 83.89 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 12 | 10 |
| 667 | 83.89 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 9 | 9 |
| 669 | 83.90 | wind | 3.0 | 14400 | < th | dose independent | sin | 9 | NA |
| 717 | 83.99 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 24 | 2 |
| 721 | 84.00 | humidity | 90.0 | 4320 | < th | dose independent | rect. | 7 | 3 |
| 735 | 84.03 | wind | 3.0 | 14400 | > th | dose independent | sin | 8 | NA |
| 764 | 84.08 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 18 | 2 |
| 830 | 84.18 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 10 | 5 |
| 878 | 84.25 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 20 | NA |
| 927 | 84.33 | humidity | 70.0 | 14400 | > th | dose dependent | rect. | 4 | 2 |
| 934 | 84.35 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 6 | 11 |
| 936 | 84.35 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 6 | 11 |
| 938 | 84.36 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 6 | 11 |
| 967 | 84.41 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 12 | 3 |
| 996 | 84.46 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 9 | 1 |