Os11g0516100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os11g0516100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 18.96 | 0.205 | 10.7 | 0.42 | 0.255 | -0.294 | 0.076 | -0.523 | -0.0862 | 20.1 | 16.39 | 249 | -- | -- |
| 19.76 | 0.207 | 10.7 | 0.397 | 0.242 | -0.402 | -0.371 | -- | -0.0959 | 22.3 | 14.99 | 287 | -- | -- |
| 18.98 | 0.203 | 10.7 | 0.418 | 0.257 | -0.306 | -- | -0.505 | -0.0872 | 20.3 | 15.39 | 250 | -- | -- |
| 20.02 | 0.208 | 10.7 | 0.419 | 0.261 | -0.326 | -- | -- | -0.0899 | 20.6 | 15.35 | 250 | -- | -- |
| 19.77 | 0.207 | 10.7 | 0.434 | -- | -0.426 | -- | -0.647 | -0.1 | -- | 13.36 | 539 | -- | -- |
| 20.38 | 0.212 | 10.7 | 0.433 | 0.385 | -- | 0.561 | -- | -0.0746 | 16.5 | -- | -- | -- | -- |
| 21.17 | 0.215 | 10.7 | 0.437 | 0.391 | -- | -- | -- | -0.0717 | 16.8 | -- | -- | -- | -- |
| 20.58 | 0.211 | 10.7 | 0.42 | -- | -0.457 | -- | -- | -0.108 | -- | 14.52 | 578 | -- | -- |
| 24.59 | 0.231 | 10.7 | -- | 0.252 | -0.342 | -- | -- | -0.136 | 20.7 | 17.32 | 253 | -- | -- |
| 29.28 | 0.253 | 10.7 | 0.422 | -- | -- | -- | -- | -0.0818 | -- | -- | -- | -- | -- |
| 26.2 | 0.239 | 10.7 | -- | 0.383 | -- | -- | -- | -0.12 | 16.8 | -- | -- | -- | -- |
| 25.16 | 0.234 | 10.7 | -- | -- | -0.469 | -- | -- | -0.155 | -- | 16.85 | 591 | -- | -- |
| 33.98 | 0.272 | 10.7 | -- | -- | -- | -- | -- | -0.129 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 18.09 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 3 | 8 |
| 11 | 18.21 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 3 | 2 |
| 13 | 18.22 | temperature | 20.0 | 720 | > th | dose independent | rect. | 3 | 10 |
| 15 | 18.24 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 10 | 8 |
| 16 | 18.24 | temperature | 10.0 | 43200 | > th | dose independent | rect. | 9 | 9 |
| 20 | 18.26 | temperature | 20.0 | 720 | > th | dose independent | rect. | 3 | 8 |
| 29 | 18.29 | temperature | 20.0 | 270 | > th | dose independent | rect. | 3 | 17 |
| 45 | 18.35 | temperature | 15.0 | 720 | > th | dose dependent | sin | 6 | NA |
| 64 | 18.39 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 8 | 8 |
| 115 | 18.50 | temperature | 20.0 | 720 | > th | dose independent | sin | 5 | NA |
| 149 | 18.56 | radiation | 1.0 | 720 | < th | dose independent | rect. | 8 | 8 |
| 155 | 18.56 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 3 | 18 |
| 164 | 18.58 | humidity | 90.0 | 270 | < th | dose independent | rect. | 9 | 10 |
| 166 | 18.58 | temperature | 15.0 | 270 | > th | dose dependent | sin | 0 | NA |
| 170 | 18.58 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 9 | 9 |
| 199 | 18.62 | temperature | 15.0 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 205 | 18.62 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 18 | 19 |
| 217 | 18.64 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 8 | 9 |
| 222 | 18.64 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 11 | 21 |
| 226 | 18.65 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 7 | 11 |
| 287 | 18.70 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 9 | 9 |
| 313 | 18.72 | humidity | 90.0 | 270 | < th | dose independent | sin | 23 | NA |
| 339 | 18.73 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 24 | 18 |
| 366 | 18.75 | radiation | 1.0 | 720 | < th | dose independent | rect. | 9 | 5 |
| 372 | 18.75 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 9 | 5 |
| 383 | 18.76 | humidity | 90.0 | 720 | < th | dose independent | rect. | 6 | 7 |
| 401 | 18.76 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 2 | 16 |
| 409 | 18.77 | temperature | 20.0 | 270 | > th | dose independent | sin | 0 | NA |
| 432 | 18.78 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 453 | 18.78 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 22 | 20 |
| 456 | 18.79 | temperature | 20.0 | 720 | > th | dose independent | rect. | 3 | 2 |
| 472 | 18.79 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 5 | 13 |
| 478 | 18.80 | radiation | 10.0 | 270 | > th | dose independent | sin | 22 | NA |
| 526 | 18.82 | radiation | 10.0 | 270 | > th | dose independent | rect. | 9 | 8 |
| 529 | 18.82 | wind | 5.0 | 270 | < th | dose independent | rect. | 13 | 13 |
| 534 | 18.82 | temperature | 15.0 | 720 | > th | dose independent | rect. | 17 | 20 |
| 569 | 18.83 | radiation | 10.0 | 270 | < th | dose independent | rect. | 13 | 17 |
| 595 | 18.84 | humidity | 90.0 | 720 | < th | dose independent | rect. | 7 | 4 |
| 601 | 18.84 | humidity | 80.0 | 30 | < th | dose independent | rect. | 1 | 17 |
| 614 | 18.84 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 3 | 13 |
| 652 | 18.85 | radiation | 10.0 | 30 | < th | dose dependent | sin | 17 | NA |
| 685 | 18.85 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 687 | 18.86 | radiation | 10.0 | 270 | < th | dose independent | rect. | 12 | 9 |
| 695 | 18.86 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 9 | 5 |
| 703 | 18.86 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 11 | 10 |
| 722 | 18.87 | humidity | 80.0 | 30 | < th | dose independent | rect. | 3 | 15 |
| 727 | 18.87 | atmosphere | 1015.0 | 720 | < th | dose independent | rect. | 23 | 16 |
| 742 | 18.87 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 3 | 10 |
| 755 | 18.87 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 14 | 23 |
| 756 | 18.88 | temperature | 15.0 | 720 | > th | dose independent | sin | 10 | NA |
| 789 | 18.89 | radiation | 10.0 | 90 | < th | dose independent | sin | 17 | NA |
| 794 | 18.89 | temperature | 20.0 | 270 | > th | dose independent | rect. | 8 | 10 |
| 800 | 18.89 | humidity | 80.0 | 30 | < th | dose independent | rect. | 21 | 21 |
| 830 | 18.90 | radiation | 10.0 | 90 | > th | dose independent | sin | 19 | NA |
| 834 | 18.90 | temperature | 20.0 | 30 | > th | dose independent | rect. | 9 | 9 |
| 850 | 18.90 | temperature | 20.0 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 912 | 18.91 | wind | 9.0 | 270 | < th | dose dependent | rect. | 13 | 13 |
| 927 | 18.92 | temperature | 15.0 | 4320 | > th | dose independent | rect. | 14 | 1 |
| 928 | 18.92 | radiation | 1.0 | 720 | < th | dose independent | rect. | 10 | 2 |
| 929 | 18.92 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 23 | 6 |
| 943 | 18.92 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 10 | 2 |