Os11g0514900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os11g0514900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 335.66 | 0.861 | 3.07 | 0.0337 | 0.281 | 1.33 | 0.391 | 3.3 | 0.0921 | 8.34 | 1015 | 3585 | -- | -- |
| 348.8 | 0.87 | 3.06 | 0.313 | 0.294 | 0.864 | 0.413 | -- | 0.152 | 8.14 | 1013 | 3507 | -- | -- |
| 335.47 | 0.853 | 3.09 | 0.105 | 0.261 | 2.07 | -- | 4.85 | 0.0722 | 8.68 | 1015 | 3507 | -- | -- |
| 348.96 | 0.87 | 3.05 | 0.35 | 0.272 | 0.839 | -- | -- | 0.157 | 8.33 | 1012 | 3572 | -- | -- |
| 338.43 | 0.857 | 3.11 | 0.0974 | -- | 4.17 | -- | 9.33 | 0.0958 | -- | 1016 | 3455 | -- | -- |
| 361.2 | 0.891 | 3.07 | 0.235 | 0.265 | -- | 0.303 | -- | 0.064 | 8.92 | -- | -- | -- | -- |
| 361.51 | 0.89 | 3.07 | 0.245 | 0.264 | -- | -- | -- | 0.0641 | 8.88 | -- | -- | -- | -- |
| 353.15 | 0.875 | 3.06 | 0.327 | -- | 0.856 | -- | -- | 0.154 | -- | 1013 | 3579 | -- | -- |
| 351.56 | 0.873 | 3.06 | -- | 0.273 | 0.846 | -- | -- | 0.11 | 8.47 | 1013 | 3565 | -- | -- |
| 365.5 | 0.893 | 3.08 | 0.245 | -- | -- | -- | -- | 0.0659 | -- | -- | -- | -- | -- |
| 363.1 | 0.891 | 3.08 | -- | 0.265 | -- | -- | -- | 0.0368 | 8.81 | -- | -- | -- | -- |
| 355.74 | 0.878 | 3.07 | -- | -- | 0.84 | -- | -- | 0.11 | -- | 1013 | 3563 | -- | -- |
| 367.08 | 0.894 | 3.09 | -- | -- | -- | -- | -- | 0.0387 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 333.85 | radiation | 40.0 | 30 | > th | dose dependent | rect. | 12 | 1 |
| 2 | 333.91 | temperature | 30.0 | 30 | < th | dose independent | rect. | 12 | 1 |
| 3 | 334.02 | wind | 7.0 | 30 | < th | dose independent | rect. | 12 | 1 |
| 5 | 334.08 | radiation | 40.0 | 30 | > th | dose independent | rect. | 12 | 1 |
| 7 | 334.13 | temperature | 20.0 | 30 | > th | dose independent | rect. | 12 | 1 |
| 8 | 334.13 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 12 | 1 |
| 9 | 334.19 | humidity | 90.0 | 30 | < th | dose independent | rect. | 12 | 1 |
| 13 | 334.31 | atmosphere | 1000.0 | 30 | > th | dose dependent | rect. | 12 | 1 |
| 16 | 334.37 | wind | 9.0 | 30 | < th | dose dependent | rect. | 12 | 1 |
| 17 | 334.46 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 12 | 1 |
| 18 | 334.48 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 12 | 1 |
| 21 | 334.53 | temperature | 10.0 | 30 | > th | dose independent | rect. | 12 | 1 |
| 23 | 334.53 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 12 | 1 |
| 24 | 334.53 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 12 | 1 |
| 25 | 334.53 | radiation | 1.0 | 30 | > th | dose independent | rect. | 12 | 1 |
| 26 | 334.53 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 12 | 1 |
| 27 | 334.53 | temperature | 10.0 | 30 | > th | dose independent | rect. | 13 | 23 |
| 28 | 334.53 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 12 | 1 |
| 29 | 334.64 | wind | 1.0 | 30 | > th | dose independent | rect. | 12 | 1 |
| 37 | 335.31 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 41 | 335.31 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 44 | 335.31 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 14 | 23 |
| 53 | 335.51 | humidity | 50.0 | 30 | > th | dose independent | rect. | 12 | 1 |
| 61 | 335.68 | wind | 1.0 | 30 | > th | dose dependent | rect. | 12 | 1 |
| 64 | 335.91 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 12 | 1 |
| 66 | 336.13 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 12 | 1 |
| 71 | 336.57 | wind | 5.0 | 90 | > th | dose independent | rect. | 4 | 3 |
| 72 | 336.63 | wind | 5.0 | 90 | > th | dose dependent | rect. | 5 | 2 |
| 76 | 336.92 | wind | 9.0 | 30 | < th | dose independent | rect. | 13 | 23 |
| 92 | 337.79 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 94 | 337.87 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 13 | 23 |
| 100 | 338.48 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 101 | 338.58 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 16 | 6 |
| 103 | 338.59 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 18 | 3 |
| 104 | 338.59 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 105 | 338.60 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 116 | 338.73 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 13 | 9 |
| 120 | 338.75 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 15 | 7 |
| 144 | 338.90 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 14 | 11 |
| 162 | 338.96 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 12 | 14 |
| 167 | 338.97 | atmosphere | 1015.0 | 4320 | > th | dose dependent | sin | 17 | NA |
| 168 | 338.97 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 182 | 339.01 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 12 | 11 |
| 197 | 339.09 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 22 | 3 |
| 208 | 339.12 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 223 | 339.17 | atmosphere | 1015.0 | 4320 | > th | dose independent | sin | 17 | NA |
| 247 | 339.24 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 9 | 5 |
| 253 | 339.26 | atmosphere | 1015.0 | 4320 | < th | dose independent | sin | 16 | NA |
| 290 | 339.36 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 17 | 9 |
| 317 | 339.42 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 9 | 17 |
| 395 | 339.54 | humidity | 50.0 | 4320 | < th | dose dependent | rect. | 16 | 22 |
| 405 | 339.56 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 9 | 17 |
| 423 | 339.59 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 22 | 3 |
| 446 | 339.63 | humidity | 50.0 | 4320 | < th | dose independent | rect. | 10 | 1 |
| 450 | 339.63 | humidity | 50.0 | 4320 | < th | dose dependent | rect. | 10 | 1 |
| 517 | 339.78 | wind | 3.0 | 10 | > th | dose dependent | rect. | 6 | 1 |
| 534 | 339.81 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 15 | 19 |
| 563 | 339.87 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 14 | 20 |
| 617 | 339.94 | wind | 3.0 | 10 | > th | dose independent | rect. | 6 | 1 |
| 642 | 339.96 | atmosphere | 1010.0 | 4320 | > th | dose dependent | rect. | 16 | 1 |
| 769 | 340.09 | atmosphere | 1015.0 | 4320 | > th | dose independent | no | NA | NA |
| 776 | 340.10 | atmosphere | 1015.0 | 4320 | < th | dose independent | no | NA | NA |
| 793 | 340.11 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 20 | 23 |
| 822 | 340.14 | humidity | 50.0 | 4320 | < th | dose dependent | sin | 9 | NA |
| 833 | 340.15 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 1 | 23 |
| 835 | 340.15 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 1 | 23 |
| 861 | 340.19 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 1 | 1 |
| 900 | 340.22 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 14 | 20 |
| 906 | 340.23 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 16 | 18 |
| 911 | 340.24 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 23 | 23 |
| 919 | 340.25 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 23 | 23 |
| 998 | 340.36 | atmosphere | 1015.0 | 4320 | > th | dose dependent | no | NA | NA |