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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0514700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Leucine rich repeat, N-terminal domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.83 (0.0312) R2 : 0.00263
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0721 (0.0658) R2dN8 : 0.00339 R2N8 : 0.00263
σ : 0.588
deviance : 158.83
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
147.92 0.571 2.84 0.235 0.396 -0.469 2.82 -2.97 -0.0522 13.2 0.5097 254 -- --
151.2 0.573 2.83 0.342 0.162 -0.187 0.706 -- -0.00331 2.02 53.11 890 -- --
151.54 0.573 2.83 0.334 0.0316 -0.107 -- -2.22 -0.0948 1.25 20.05 412 -- --
152.21 0.575 2.83 0.344 0.163 -0.183 -- -- -0.00617 0.894 53.11 891 -- --
150.52 0.571 2.85 0.289 -- -0.172 -- -1.46 -0.0605 -- 20.01 425 -- --
151.94 0.578 2.82 0.353 0.176 -- 0.785 -- -0.0338 3.56 -- -- -- --
153.68 0.581 2.83 0.34 0.183 -- -- -- -0.0381 2.49 -- -- -- --
153.07 0.576 2.82 0.354 -- -0.208 -- -- -0.00385 -- 11.45 294 -- --
155.57 0.581 2.83 -- 0.169 -0.173 -- -- -0.0193 1.36 53.21 888 -- --
155.65 0.583 2.83 0.347 -- -- -- -- -0.0335 -- -- -- -- --
156.73 0.586 2.84 -- 0.189 -- -- -- -0.0759 2.52 -- -- -- --
156.05 0.582 2.83 -- -- -0.182 -- -- -0.0659 -- 8.56 280 -- --
158.83 0.588 2.83 -- -- -- -- -- -0.0721 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 137.85 wind 1.0 10 < th dose independent rect. 21 1
5 137.85 wind 1.0 10 < th dose dependent rect. 21 1
25 142.14 atmosphere 1000.0 10 < th dose independent rect. 3 1
32 142.14 atmosphere 1000.0 10 < th dose dependent rect. 3 1
53 143.52 wind 1.0 270 < th dose dependent rect. 3 2
64 144.40 atmosphere 1005.0 10 > th dose dependent rect. 21 1
73 145.18 wind 1.0 90 < th dose dependent rect. 2 20
77 145.25 wind 1.0 90 < th dose independent rect. 2 3
79 145.49 temperature 25.0 10 < th dose independent rect. 20 2
101 145.80 wind 1.0 90 < th dose dependent rect. 2 7
109 145.90 wind 1.0 90 < th dose independent rect. 2 7
113 145.92 wind 1.0 90 < th dose dependent rect. 2 10
115 145.94 wind 1.0 270 < th dose independent rect. 4 1
116 145.94 atmosphere 1005.0 30 > th dose independent rect. 21 1
132 146.16 wind 1.0 90 < th dose independent rect. 2 20
133 146.17 wind 1.0 90 < th dose independent rect. 2 1
141 146.24 wind 5.0 90 < th dose dependent rect. 20 1
146 146.28 temperature 10.0 30 > th dose dependent rect. 22 23
147 146.30 atmosphere 1005.0 90 > th dose dependent rect. 12 10
163 146.41 precipitation 0.1 270 > th dose independent rect. 20 1
164 146.41 precipitation 0.1 270 > th dose dependent rect. 20 1
208 146.74 temperature 25.0 10 > th dose independent rect. 20 1
210 146.75 wind 1.0 90 < th dose dependent rect. 2 14
224 146.80 wind 1.0 4320 < th dose dependent rect. 21 1
229 146.83 precipitation 0.1 90 > th dose independent rect. 13 1
233 146.83 precipitation 0.1 90 > th dose dependent rect. 13 1
245 146.87 wind 1.0 90 > th dose independent rect. 23 21
249 146.90 radiation 10.0 10 < th dose dependent rect. 14 1
251 146.91 humidity 90.0 30 < th dose independent rect. 20 1
254 146.92 temperature 20.0 10 > th dose dependent rect. 20 1
261 146.95 temperature 10.0 30 > th dose dependent rect. 20 1
265 146.96 radiation 20.0 10 < th dose independent rect. 21 18
267 146.96 wind 1.0 1440 < th dose dependent rect. 24 1
268 146.96 atmosphere 1015.0 30 < th dose dependent rect. 20 1
269 146.97 wind 1.0 30 > th dose independent rect. 20 1
271 146.97 wind 9.0 30 < th dose independent rect. 20 1
272 146.97 temperature 10.0 30 > th dose independent rect. 20 1
275 146.97 humidity 50.0 30 > th dose independent rect. 20 1
278 146.97 atmosphere 995.0 30 > th dose independent rect. 20 1
279 146.97 atmosphere 1010.0 30 < th dose independent rect. 20 1
281 146.97 radiation 10.0 10 < th dose independent rect. 14 1
283 146.97 radiation 1.0 30 < th dose independent rect. 20 1
288 146.97 precipitation 0.1 30 < th dose independent rect. 20 1
289 146.97 temperature 10.0 30 > th dose independent rect. 21 23
291 146.97 radiation 1.0 30 < th dose dependent rect. 20 1
296 146.97 precipitation 0.1 30 < th dose dependent rect. 20 1
310 147.01 wind 1.0 30 > th dose dependent rect. 20 1
315 147.02 humidity 50.0 30 > th dose dependent rect. 20 1
328 147.06 humidity 90.0 30 < th dose dependent rect. 20 1
341 147.09 radiation 40.0 14400 < th dose dependent rect. 21 1
351 147.12 temperature 10.0 1440 > th dose independent rect. 21 1
354 147.12 temperature 30.0 1440 < th dose independent rect. 21 1
358 147.12 humidity 50.0 1440 > th dose independent rect. 21 1
364 147.12 atmosphere 995.0 1440 > th dose independent rect. 21 1
365 147.12 radiation 1.0 1440 < th dose independent rect. 21 1
385 147.12 temperature 10.0 1440 > th dose independent rect. 22 23
392 147.13 temperature 25.0 10 < th dose independent rect. 13 10
419 147.20 temperature 25.0 10 < th dose independent rect. 12 23
421 147.20 radiation 20.0 10 < th dose dependent rect. 21 18
451 147.25 radiation 10.0 270 < th dose dependent rect. 17 21
467 147.29 radiation 1.0 1440 < th dose dependent rect. 21 2
481 147.33 temperature 25.0 10 < th dose independent rect. 20 15
482 147.33 temperature 30.0 30 < th dose dependent rect. 20 1
514 147.36 precipitation 0.1 720 < th dose independent rect. 20 9
524 147.36 wind 1.0 720 < th dose dependent rect. 13 9
525 147.36 precipitation 0.1 720 < th dose dependent rect. 20 9
527 147.37 precipitation 0.1 720 < th dose independent rect. 17 6
533 147.37 precipitation 0.1 720 < th dose dependent rect. 17 6
563 147.46 wind 1.0 720 < th dose independent rect. 21 1
577 147.50 wind 1.0 720 < th dose dependent rect. 21 1
582 147.51 temperature 25.0 30 < th dose independent rect. 20 19
592 147.52 wind 1.0 720 < th dose dependent rect. 11 11
596 147.53 temperature 25.0 10 < th dose independent rect. 3 21
648 147.63 radiation 10.0 270 < th dose independent rect. 17 21
651 147.63 wind 1.0 90 < th dose dependent sin 5 NA
657 147.65 wind 1.0 4320 < th dose independent rect. 21 1
681 147.71 wind 3.0 90 < th dose independent rect. 13 10
686 147.72 precipitation 0.1 720 < th dose independent rect. 17 21
688 147.72 precipitation 0.1 720 < th dose dependent rect. 17 21
711 147.76 radiation 20.0 10 < th dose independent rect. 21 13
766 147.80 temperature 25.0 10 > th dose independent rect. 16 6
776 147.81 precipitation 0.1 720 < th dose independent rect. 19 18
781 147.81 precipitation 0.1 720 < th dose dependent rect. 19 18
804 147.83 precipitation 0.1 720 < th dose independent rect. 17 14
812 147.83 precipitation 0.1 720 < th dose dependent rect. 17 14
832 147.87 radiation 1.0 270 < th dose independent rect. 17 13
865 147.88 wind 9.0 30 < th dose independent rect. 22 22
895 147.90 temperature 25.0 10 < th dose dependent rect. 12 2
961 147.94 wind 9.0 1440 < th dose independent rect. 22 1