FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0514600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Somatic embryogenesis receptor kinase 1.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.94 (0.0194) R2 : 0.0189
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.121 (0.0409) R2dN8 : 0.0244 R2N8 : 0.0189
σ : 0.366
deviance : 61.4
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
59.08 0.361 2.92 0.0404 0.0221 0.177 -0.276 0.741 0.149 5.99 0.9415 3373 -- --
59.08 0.358 2.94 -0.00654 0.0234 0.345 -0.273 -- 0.149 5.98 0.8979 3482 -- --
59.21 0.358 2.92 0.026 0.0304 0.241 -- 0.608 0.157 9.23 0.9636 3481 -- --
59.21 0.358 2.93 -0.0108 0.0399 0.363 -- -- 0.158 9.69 0.9169 3372 -- --
59.28 0.359 2.93 0.0295 -- 0.213 -- 0.631 0.15 -- 0.9491 3473 -- --
61 0.366 2.94 0.0906 0.023 -- -0.264 -- 0.13 6.52 -- -- -- --
61.16 0.366 2.94 0.0875 0.0271 -- -- -- 0.131 9.03 -- -- -- --
59.29 0.359 2.94 -0.00784 -- 0.347 -- -- 0.151 -- 0.9049 3478 -- --
59.21 0.358 2.93 -- 0.0378 0.352 -- -- 0.152 9.69 0.9152 3372 -- --
61.2 0.366 2.94 0.0874 -- -- -- -- 0.131 -- -- -- -- --
61.36 0.366 2.94 -- 0.0272 -- -- -- 0.121 8.79 -- -- -- --
59.29 0.359 2.94 -- -- 0.344 -- -- 0.152 -- 0.9065 3473 -- --
61.4 0.366 2.94 -- -- -- -- -- 0.121 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 56.71 precipitation 0.1 270 > th dose independent rect. 18 1
2 56.71 precipitation 0.1 270 > th dose dependent rect. 18 1
3 57.50 wind 1.0 10 < th dose dependent rect. 13 9
4 57.57 wind 1.0 10 < th dose independent rect. 13 9
6 57.65 wind 1.0 30 < th dose independent rect. 10 1
7 57.65 temperature 10.0 1440 > th dose independent rect. 11 1
11 57.65 atmosphere 995.0 1440 > th dose independent rect. 11 1
14 57.65 precipitation 0.1 1440 < th dose independent rect. 11 1
15 57.65 temperature 10.0 1440 > th dose independent rect. 12 23
18 57.65 wind 1.0 30 < th dose dependent rect. 10 1
19 57.65 precipitation 0.1 1440 < th dose dependent rect. 11 1
21 57.68 humidity 70.0 30 < th dose independent rect. 10 1
22 57.70 temperature 25.0 30 > th dose dependent rect. 10 1
23 57.72 radiation 20.0 30 > th dose independent rect. 10 1
26 57.73 humidity 80.0 30 < th dose dependent rect. 10 1
28 57.75 temperature 20.0 10 < th dose independent rect. 12 9
32 57.76 wind 1.0 10 < th dose dependent rect. 9 6
61 57.82 precipitation 0.1 270 > th dose dependent rect. 10 8
62 57.84 wind 1.0 30 < th dose independent rect. 9 5
65 57.84 radiation 1.0 30 > th dose dependent rect. 10 1
77 57.87 atmosphere 1005.0 30 > th dose independent rect. 10 1
79 57.88 temperature 25.0 30 > th dose independent rect. 10 1
80 57.88 atmosphere 1000.0 30 > th dose dependent rect. 10 1
82 57.89 atmosphere 1010.0 30 < th dose independent rect. 10 1
85 57.89 precipitation 0.1 270 > th dose dependent rect. 13 5
89 57.90 wind 1.0 10 < th dose dependent rect. 11 3
97 57.92 wind 1.0 10 < th dose independent rect. 13 1
99 57.92 humidity 60.0 30 > th dose independent rect. 10 1
111 57.92 wind 1.0 10 < th dose dependent rect. 13 1
121 57.93 wind 5.0 30 < th dose independent rect. 10 1
124 57.93 temperature 10.0 30 > th dose independent rect. 10 1
126 57.93 temperature 30.0 30 < th dose independent rect. 10 1
132 57.93 precipitation 0.1 30 < th dose independent rect. 10 1
138 57.93 temperature 10.0 30 > th dose independent rect. 11 23
139 57.93 wind 7.0 30 < th dose dependent rect. 10 1
141 57.93 precipitation 0.1 30 < th dose dependent rect. 10 1
148 57.95 wind 1.0 30 > th dose independent rect. 10 1
149 57.95 wind 1.0 90 < th dose independent rect. 12 1
150 57.95 temperature 20.0 10 < th dose independent rect. 18 2
157 57.95 wind 1.0 90 < th dose dependent rect. 13 1
167 57.96 radiation 40.0 30 < th dose independent rect. 10 1
268 58.03 atmosphere 1000.0 270 < th dose independent rect. 16 1
282 58.04 atmosphere 1000.0 270 < th dose dependent rect. 16 1
296 58.05 wind 1.0 90 < th dose independent rect. 12 9
363 58.15 atmosphere 1015.0 30 < th dose dependent rect. 10 1
381 58.20 wind 1.0 30 > th dose dependent rect. 10 1
436 58.28 precipitation 0.1 270 > th dose independent rect. 10 8
461 58.32 precipitation 0.1 270 > th dose independent rect. 13 5
480 58.37 humidity 50.0 30 > th dose dependent rect. 10 1
481 58.37 atmosphere 1010.0 30 < th dose dependent rect. 6 1
489 58.39 radiation 40.0 30 < th dose dependent rect. 10 1
498 58.42 temperature 25.0 270 > th dose independent rect. 5 3
499 58.44 wind 1.0 30 < th dose dependent sin 23 NA
505 58.47 wind 1.0 30 < th dose independent sin 22 NA
512 58.48 temperature 25.0 10 > th dose dependent rect. 6 5
515 58.48 temperature 20.0 90 > th dose dependent rect. 11 18
523 58.51 temperature 25.0 10 > th dose dependent rect. 22 13
524 58.52 precipitation 0.1 270 > th dose independent rect. 8 10
540 58.54 wind 9.0 30 < th dose independent rect. 11 23
585 58.58 wind 1.0 30 > th dose independent sin 22 NA
593 58.59 precipitation 0.1 270 > th dose dependent sin 20 NA
602 58.61 wind 3.0 720 < th dose dependent rect. 9 6
625 58.65 precipitation 0.1 720 > th dose dependent rect. 24 18
631 58.67 humidity 80.0 270 > th dose independent rect. 9 11
639 58.69 temperature 25.0 270 > th dose dependent rect. 5 3
648 58.71 humidity 80.0 30 < th dose independent rect. 8 1
649 58.71 atmosphere 1000.0 30 > th dose independent rect. 8 1
651 58.71 radiation 10.0 30 > th dose independent rect. 8 1
654 58.71 wind 1.0 30 > th dose dependent rect. 8 1
655 58.71 temperature 15.0 30 > th dose dependent rect. 8 1
657 58.71 atmosphere 995.0 30 > th dose dependent rect. 8 1
662 58.72 temperature 25.0 30 > th dose independent rect. 8 1
674 58.73 wind 1.0 30 > th dose independent rect. 8 1
675 58.73 wind 5.0 30 < th dose independent rect. 8 1
678 58.73 temperature 10.0 30 > th dose independent rect. 8 1
681 58.73 temperature 30.0 30 < th dose independent rect. 8 1
682 58.73 humidity 50.0 30 > th dose independent rect. 8 1
687 58.73 atmosphere 1010.0 30 < th dose independent rect. 8 1
690 58.73 precipitation 0.1 30 < th dose independent rect. 8 1
691 58.73 precipitation 0.1 720 > th dose independent rect. 4 14
692 58.73 temperature 10.0 30 > th dose independent rect. 9 23
694 58.73 humidity 90.0 30 < th dose dependent rect. 8 1
696 58.73 precipitation 0.1 30 < th dose dependent rect. 8 1
700 58.74 temperature 10.0 1440 > th dose independent rect. 9 1
703 58.74 atmosphere 995.0 1440 > th dose independent rect. 9 1
706 58.74 atmosphere 1015.0 1440 < th dose independent rect. 9 1
707 58.74 radiation 30.0 30 < th dose independent rect. 8 1
712 58.74 temperature 10.0 1440 > th dose independent rect. 10 23
715 58.74 radiation 1.0 30 > th dose dependent rect. 8 1
724 58.75 wind 9.0 30 < th dose dependent rect. 8 1
725 58.75 wind 3.0 720 < th dose dependent rect. 13 1
735 58.77 wind 1.0 720 < th dose independent rect. 9 4
739 58.77 humidity 50.0 30 > th dose dependent rect. 8 1
741 58.77 radiation 40.0 30 < th dose dependent rect. 8 1
774 58.81 atmosphere 1010.0 10 < th dose independent rect. 6 1
788 58.82 temperature 25.0 90 > th dose independent rect. 5 6
805 58.83 humidity 70.0 270 > th dose dependent rect. 9 11
813 58.84 wind 1.0 720 < th dose independent rect. 13 8
834 58.85 atmosphere 1015.0 30 < th dose dependent rect. 8 1
836 58.85 wind 1.0 720 < th dose dependent rect. 13 8
882 58.90 wind 3.0 720 > th dose independent rect. 11 4
883 58.90 precipitation 0.1 4320 > th dose independent rect. 5 13
884 58.90 precipitation 0.1 4320 < th dose independent rect. 5 13
889 58.90 precipitation 0.1 4320 < th dose dependent rect. 5 13
899 58.92 atmosphere 1005.0 10 < th dose independent rect. 20 1
902 58.92 humidity 80.0 270 < th dose independent rect. 9 12
916 58.93 precipitation 0.1 4320 < th dose independent rect. 13 6
917 58.93 wind 1.0 720 > th dose independent rect. 11 8
922 58.93 precipitation 0.1 4320 < th dose dependent rect. 13 6
923 58.93 wind 1.0 720 < th dose dependent rect. 9 12
927 58.94 precipitation 0.1 4320 > th dose independent rect. 13 6
933 58.94 precipitation 0.1 720 > th dose independent rect. 24 18
972 58.97 precipitation 0.1 4320 < th dose independent rect. 15 4
977 58.97 precipitation 0.1 4320 < th dose dependent rect. 15 4
984 58.98 precipitation 0.1 4320 > th dose independent rect. 8 11
985 58.98 precipitation 0.1 4320 < th dose independent rect. 8 11
998 58.98 precipitation 0.1 4320 < th dose dependent rect. 8 11