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Os11g0514500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Leucine-rich repeat-containing extracellular glycoprotein precursor.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.56 (0.0529) R2 : 0.495
β1 : -1.63 (0.23) R2dD : 0.0872 R2D : 0.118
β2 : 1.23 (0.123) R2dC : 0.109 R2C : 0.03
β3 : -2.38 (0.251) R2dE : 0.111 R2E : 0.00388
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -6.65 (0.987) R2dD*E : 0.078 R2D*E : 0.134
γ1 : 0.927 (0.111) R2dN8 : 0.108 R2N8 : 0.0859
σ : 0.949
deviance : 415.36
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C
peak time of C : 22.5
E
wheather : atmosphere
threshold : 960.2
memory length : 10723
response mode : > th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 7.53
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
418.21 0.961 8.59 -1.71 0.906 -2.35 -0.916 -6.02 0.877 22.4 969.9 10760 5.74 --
434.83 0.971 8.59 -2.63 0.815 -3.83 -2.98 -- 0.965 4.02 914.7 10718 4.39 --
415.36 0.949 8.56 -1.63 1.23 -2.38 -- -6.65 0.927 22.5 960.2 10723 7.53 --
450.62 0.989 8.71 -2.62 1.34 -2.5 -- -- 0.685 21.5 939.6 11397 15 --
452.75 0.991 8.57 -1.74 -- -2.95 -- -6.42 0.884 -- 894.7 8384 8.45 --
550.28 1.1 8.7 -2.03 1.26 -- 0.495 -- 0.733 20.5 -- -- -- --
550.89 1.1 8.7 -2.05 1.25 -- -- -- 0.732 20.7 -- -- -- --
466.57 1.01 8.68 -2.64 -- -3.33 -- -- 0.717 -- 897.3 9796 7.45 --
610.66 1.15 8.65 -- 1.29 -1.6 -- -- 0.983 20.8 901 11484 16.6 --
639.24 1.18 8.67 -2.05 -- -- -- -- 0.721 -- -- -- -- --
661.51 1.2 8.65 -- 1.26 -- -- -- 0.96 20.6 -- -- -- --
612.67 1.15 8.63 -- -- -2.73 -- -- 1.02 -- 783.3 11765 23.5 --
750.26 1.28 8.61 -- -- -- -- -- 0.949 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 444.11 atmosphere 1000 14400 > th dose dependent rect. 23 1
19 446.31 atmosphere 1000 14400 > th dose dependent rect. 19 9
39 446.65 atmosphere 1000 14400 > th dose dependent rect. 3 1
71 447.08 atmosphere 1000 14400 > th dose dependent sin 13 NA
88 447.23 atmosphere 1000 14400 > th dose dependent rect. 1 1
97 447.36 atmosphere 1015 14400 < th dose dependent rect. 23 1
136 447.77 atmosphere 1000 14400 > th dose dependent rect. 1 3
163 447.96 atmosphere 1010 14400 > th dose independent rect. 21 1
222 448.19 atmosphere 1015 14400 < th dose dependent rect. 19 5
244 448.28 atmosphere 1015 14400 < th dose dependent rect. 20 1
251 448.30 atmosphere 1000 14400 > th dose dependent rect. 19 21
257 448.31 atmosphere 1000 14400 > th dose dependent rect. 3 23
275 448.34 atmosphere 1000 14400 > th dose dependent no NA NA
277 448.34 atmosphere 1000 14400 > th dose dependent rect. 5 23
283 448.37 atmosphere 1000 14400 > th dose dependent rect. 1 23
293 448.41 atmosphere 1015 14400 < th dose dependent rect. 19 7
343 448.57 atmosphere 1000 14400 > th dose dependent rect. 5 1
370 448.68 atmosphere 1015 14400 < th dose dependent rect. 19 9
497 449.16 atmosphere 1015 14400 < th dose dependent rect. 3 1
534 449.32 atmosphere 1015 14400 < th dose dependent rect. 1 1
584 449.47 atmosphere 1015 14400 < th dose dependent sin 13 NA
598 449.51 atmosphere 1010 14400 < th dose independent rect. 21 1
725 449.92 atmosphere 1015 14400 < th dose dependent rect. 1 3
728 449.93 atmosphere 1000 14400 > th dose dependent rect. 15 1
756 449.98 atmosphere 1000 14400 > th dose dependent rect. 11 1
892 450.33 atmosphere 1015 14400 < th dose dependent rect. 3 3
925 450.42 atmosphere 1015 14400 < th dose dependent rect. 5 1