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Os11g0514400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Somatic embryogenesis receptor kinase 1.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.3 (0.0994) R2 : 0.531
β1 : 6.95 (0.378) R2dD : 0.402 R2D : 0.0853
β2 : 1.57 (0.257) R2dC : 0.0411 R2C : -0.041
β3 : -3.72 (0.34) R2dE : 0.142 R2E : -0.102
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 3.32 (0.216) R2dN8 : 0.328 R2N8 : 0.0598
σ : 1.85
deviance : 1571.78
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C
peak time of C : 18.6
E
wheather : temperature
threshold : 18.79
memory length : 1437
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 16.8
open length of G : 0.724

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
1564.23 1.86 7.29 7.46 1.63 -3.57 -1.04 2.22 3.34 18.6 20.38 1436 16.8 0.708
1571 1.85 7.3 6.91 1.61 -3.42 -1.14 -- 3.26 18.4 20.3 1436 16.8 0.728
1566.9 1.84 7.29 7.49 1.63 -3.56 -- 2.27 3.34 18.6 20.4 1436 16.8 0.706
1571.78 1.85 7.3 6.95 1.57 -3.72 -- -- 3.32 18.6 18.79 1437 16.8 0.724
1652.16 1.89 7.25 7.51 -- -3.47 -- 3.13 3.19 -- 20.57 1176 16.6 1.05
1986.75 2.09 7.46 5.79 1.76 -- -0.681 -- 2.71 18.2 -- -- -- --
1987.86 2.09 7.46 5.8 1.76 -- -- -- 2.71 18.2 -- -- -- --
1657 1.9 7.34 6.71 -- -3.34 -- -- 2.97 -- 20.37 1162 16.6 1.18
2707.66 2.42 7.51 -- 2.2 -2.93 -- -- 2.84 18.7 20.58 1566 17.3 1.42
2148.32 2.17 7.43 5.75 -- -- -- -- 2.67 -- -- -- -- --
2873.57 2.51 7.61 -- 1.68 -- -- -- 2.06 18.4 -- -- -- --
2776.43 2.45 7.54 -- -- -2.23 -- -- 2.21 -- 20.7 1114 16.9 1.5
3019.85 2.56 7.58 -- -- -- -- -- 2.03 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 1523.16 wind 9.0 43200 > th dose dependent rect. 18 13
4 1545.61 wind 9.0 43200 > th dose independent rect. 18 13
8 1551.58 atmosphere 995.0 43200 < th dose independent rect. 15 1
10 1552.39 wind 9.0 43200 > th dose dependent rect. 18 6
15 1555.11 atmosphere 995.0 43200 > th dose independent rect. 15 1
16 1555.73 atmosphere 995.0 43200 < th dose dependent rect. 15 1
18 1560.17 wind 9.0 43200 < th dose independent rect. 18 14
19 1560.65 wind 5.0 43200 < th dose independent rect. 14 18
22 1562.29 atmosphere 1000.0 14400 < th dose independent rect. 20 1
23 1562.32 atmosphere 1000.0 14400 > th dose independent rect. 23 1
24 1562.39 atmosphere 1000.0 14400 < th dose independent rect. 20 4
25 1562.46 atmosphere 1000.0 14400 < th dose independent rect. 23 1
41 1563.95 wind 5.0 43200 > th dose independent rect. 14 18
44 1564.27 atmosphere 995.0 43200 > th dose independent rect. 14 3
49 1565.21 wind 9.0 43200 > th dose dependent rect. 20 1
56 1566.29 atmosphere 995.0 43200 < th dose independent rect. 14 3
64 1566.87 wind 9.0 43200 > th dose dependent rect. 18 4
70 1568.00 wind 9.0 43200 > th dose independent rect. 18 6
93 1571.03 wind 9.0 43200 > th dose independent rect. 17 16
107 1572.08 temperature 20.0 1440 > th dose dependent rect. 17 1
108 1572.10 atmosphere 995.0 43200 > th dose independent rect. 14 7
121 1573.22 wind 9.0 43200 > th dose dependent sin 13 NA
134 1575.08 radiation 30.0 14400 < th dose independent rect. 16 1
158 1578.20 radiation 30.0 14400 < th dose independent rect. 16 13
170 1579.13 radiation 30.0 14400 < th dose independent rect. 16 8
183 1580.27 wind 3.0 43200 > th dose dependent rect. 13 19
194 1581.04 wind 9.0 43200 < th dose independent rect. 18 6
215 1582.53 atmosphere 1005.0 14400 < th dose dependent rect. 24 1
220 1583.05 precipitation 0.1 14400 > th dose dependent rect. 20 6
250 1584.69 wind 9.0 43200 < th dose independent rect. 18 3
301 1587.57 wind 9.0 43200 > th dose independent rect. 18 4
349 1589.50 wind 5.0 43200 < th dose independent sin 15 NA
366 1590.36 wind 9.0 43200 > th dose independent sin 12 NA
386 1591.26 atmosphere 1000.0 14400 < th dose independent sin 12 NA
398 1591.56 temperature 20.0 270 > th dose dependent rect. 13 22
408 1591.83 atmosphere 1000.0 14400 > th dose independent sin 12 NA
421 1592.33 atmosphere 1005.0 14400 < th dose dependent sin 10 NA
422 1592.33 atmosphere 1005.0 14400 < th dose dependent rect. 20 15
446 1592.89 wind 5.0 43200 > th dose independent sin 16 NA
568 1594.97 atmosphere 1005.0 14400 < th dose dependent rect. 10 20
592 1595.23 precipitation 0.1 14400 > th dose dependent rect. 20 2
626 1595.50 wind 5.0 43200 < th dose independent rect. 2 18
636 1595.58 atmosphere 1005.0 14400 < th dose dependent rect. 4 1
640 1595.62 wind 5.0 43200 > th dose independent rect. 15 1
649 1595.71 wind 5.0 43200 < th dose independent rect. 6 13
682 1595.92 atmosphere 1005.0 14400 < th dose dependent no NA NA
688 1596.00 atmosphere 1005.0 14400 > th dose independent rect. 5 1
703 1596.17 atmosphere 1005.0 14400 < th dose dependent rect. 4 23
731 1596.55 wind 5.0 43200 < th dose independent rect. 23 21
832 1598.14 wind 1.0 43200 < th dose dependent rect. 2 1
863 1598.76 wind 5.0 43200 > th dose independent rect. 6 13
910 1599.55 atmosphere 1000.0 14400 > th dose independent rect. 11 17
940 1599.99 wind 7.0 43200 > th dose independent rect. 20 1
969 1600.38 wind 5.0 43200 > th dose independent rect. 4 16