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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0513900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.01 (0.0351) R2 : 0.887
β1 : 6.23 (0.132) R2dD : 0.601 R2D : 0.432
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.95 (0.127) R2dE : 0.0617 R2E : 0.0481
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 2.62 (0.075) R2dN8 : 0.403 R2N8 : 0.133
σ : 0.657
deviance : 199.1
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_____
C
peak time of C : --
E
wheather : radiation
threshold : 0.5503
memory length : 4323
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 18.1
open length of G : 4.71

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
194.26 0.655 5.01 5.79 0.0505 2.12 -0.511 2.06 2.55 8.25 0.7035 4322 18.1 4.73
198.11 0.656 5.02 6.25 0.0788 1.98 -0.541 -- 2.62 8.37 0.6099 4326 18.1 4.81
192.87 0.647 5.01 5.76 0.137 2.22 -- 2.26 2.55 6.51 0.6102 4327 18.1 4.52
198.62 0.656 5.01 6.23 0.127 2.03 -- -- 2.61 6.51 0.55 4328 18.1 4.63
192.22 0.646 5.02 5.69 -- 2.24 -- 2.48 2.5 -- 0.48 4322 18.2 4.58
300.87 0.813 5.03 6.72 0.0106 -- -0.54 -- 2.61 7.93 -- -- -- --
301.71 0.813 5.03 6.7 0.0205 -- -- -- 2.61 4.38 -- -- -- --
199.1 0.657 5.01 6.23 -- 1.95 -- -- 2.62 -- 0.5503 4323 18.1 4.71
731.13 1.26 5.04 -- 0.305 3.76 -- -- 2.07 6.44 7.18 4319 18.2 4.58
301.73 0.812 5.03 6.7 -- -- -- -- 2.61 -- -- -- -- --
1486.31 1.8 5.2 -- 0.152 -- -- -- 1.86 3.41 -- -- -- --
677.5 1.21 5.04 -- -- 5.12 -- -- 2.07 -- 7.18 4319 18.2 4.58
1487.61 1.8 5.2 -- -- -- -- -- 1.87 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 174.50 radiation 1 43200 < th dose dependent rect. 4 1
2 174.62 radiation 1 43200 < th dose dependent rect. 2 3
10 178.77 radiation 1 43200 < th dose dependent rect. 21 8
15 182.98 radiation 1 14400 > th dose independent rect. 18 11
16 183.92 radiation 1 14400 > th dose independent rect. 18 1
27 184.96 wind 5 43200 > th dose independent rect. 15 1
28 185.29 radiation 1 14400 < th dose independent rect. 18 11
29 185.59 wind 5 43200 < th dose independent rect. 15 1
32 187.36 wind 3 43200 < th dose dependent rect. 8 2
35 187.96 radiation 1 14400 < th dose independent rect. 18 5
38 188.04 radiation 1 14400 < th dose independent rect. 18 9
39 188.06 radiation 1 14400 < th dose independent rect. 18 1
57 190.79 wind 7 43200 < th dose dependent rect. 8 9
59 190.85 radiation 1 14400 < th dose dependent rect. 18 5
60 190.88 radiation 1 14400 < th dose dependent rect. 18 1
68 190.99 wind 7 43200 < th dose dependent rect. 8 13
77 191.08 wind 1 43200 > th dose dependent rect. 8 13
78 191.24 wind 5 43200 < th dose independent rect. 14 7
80 191.26 wind 3 43200 < th dose independent rect. 9 1
82 191.35 wind 1 43200 > th dose dependent rect. 8 9
83 191.38 wind 5 43200 > th dose independent rect. 14 7
95 191.69 wind 1 43200 > th dose independent rect. 19 1
118 192.27 wind 3 43200 > th dose dependent rect. 15 1
134 192.49 wind 5 43200 < th dose independent rect. 9 11
154 192.75 wind 1 43200 > th dose dependent sin 22 NA
160 192.80 wind 3 43200 > th dose independent rect. 9 1
166 192.90 wind 7 43200 < th dose dependent sin 22 NA
196 193.19 humidity 80 43200 > th dose independent rect. 24 1
218 193.36 humidity 80 43200 < th dose independent rect. 21 12
228 193.48 wind 5 43200 > th dose independent rect. 9 11
246 193.63 wind 5 43200 < th dose independent sin 20 NA
271 193.81 wind 3 43200 > th dose independent rect. 8 9
317 194.18 humidity 80 43200 > th dose independent rect. 21 11
321 194.22 humidity 80 43200 > th dose independent rect. 23 5
335 194.28 humidity 80 43200 > th dose independent rect. 3 1
359 194.47 humidity 80 43200 < th dose dependent rect. 21 12
385 194.60 humidity 80 43200 < th dose independent rect. 20 9
390 194.64 humidity 80 43200 > th dose independent rect. 21 7
400 194.70 humidity 80 43200 < th dose independent rect. 21 4
430 194.87 humidity 80 43200 < th dose independent rect. 23 1
446 194.96 wind 5 43200 > th dose independent sin 20 NA
466 195.04 wind 3 43200 > th dose independent rect. 8 15
532 195.41 radiation 20 43200 > th dose independent rect. 9 1
536 195.43 humidity 80 43200 > th dose independent rect. 23 9
566 195.59 wind 9 43200 < th dose dependent rect. 14 1
591 195.72 humidity 80 43200 < th dose independent rect. 23 5
623 195.94 humidity 80 43200 < th dose independent rect. 3 1
740 196.62 wind 5 43200 < th dose dependent rect. 19 2
786 196.91 wind 3 43200 < th dose independent rect. 20 1
810 197.06 humidity 80 43200 < th dose independent rect. 21 1
893 197.49 humidity 80 43200 < th dose dependent rect. 21 3
943 197.73 atmosphere 1000 43200 < th dose dependent rect. 3 1