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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0513500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.69 (0.0319) R2 : 0.847
β1 : 6.29 (0.179) R2dD : 1.09 R2D : 0.0335
β2 : -- (--) R2dC : -- R2C : --
β3 : -2.05 (0.159) R2dE : 0.148 R2E : -0.737
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 2.75 (0.0764) R2dN8 : 0.805 R2N8 : 0.173
σ : 0.573
deviance : 151.22
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 14.62
memory length : 47203
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
145.76 0.567 4.58 6.01 0.166 -1.01 -0.224 3.01 2.88 10.7 21.8 2930 -- --
165.65 0.599 4.68 5.74 0.169 -1.22 -0.0307 -- 2.84 10.4 21.32 10108 -- --
145.94 0.563 4.58 6.01 0.167 -1 -- 3.02 2.88 11.2 21.87 2917 -- --
149.21 0.569 4.68 6.3 0.188 -2.03 -- -- 2.79 10.6 14.6 47520 -- --
147.15 0.565 4.59 6.03 -- -1.03 -- 3.09 2.92 -- 22.13 2616 -- --
203.83 0.669 4.79 4.52 0.206 -- -0.251 -- 2.27 11.6 -- -- -- --
204.1 0.669 4.79 4.51 0.208 -- -- -- 2.26 11.8 -- -- -- --
151.22 0.573 4.69 6.29 -- -2.05 -- -- 2.75 -- 14.62 47203 -- --
381.92 0.91 5.12 -- 0.253 2.77 -- -- 0.819 10.8 21.8 47520 -- --
206.81 0.672 4.8 4.5 -- -- -- -- 2.26 -- -- -- -- --
739.63 1.27 4.91 -- 0.167 -- -- -- 1.76 10.2 -- -- -- --
385.89 0.915 5.13 -- -- 2.76 -- -- 0.814 -- 21.76 47520 -- --
741.33 1.27 4.91 -- -- -- -- -- 1.76 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 113.13 radiation 1 43200 < th dose dependent rect. 4 1
6 114.58 radiation 1 43200 < th dose dependent rect. 21 8
14 117.06 radiation 1 14400 > th dose independent rect. 18 1
27 121.13 radiation 1 14400 < th dose independent rect. 18 11
29 122.64 radiation 1 14400 < th dose independent rect. 18 5
33 122.69 radiation 1 14400 < th dose independent rect. 18 3
35 122.70 radiation 1 14400 < th dose independent rect. 18 1
43 124.82 wind 1 43200 > th dose independent rect. 19 1
50 126.97 radiation 20 43200 < th dose dependent rect. 20 9
64 127.61 wind 5 43200 < th dose independent rect. 15 1
69 127.88 wind 5 43200 > th dose independent rect. 15 1
77 128.63 radiation 20 43200 > th dose independent rect. 9 1
84 129.24 wind 3 43200 > th dose dependent rect. 15 1
101 129.94 radiation 1 14400 < th dose dependent rect. 18 5
102 129.95 radiation 1 14400 < th dose dependent rect. 18 1
109 130.14 wind 1 43200 < th dose independent rect. 19 1
114 130.52 radiation 20 43200 < th dose dependent rect. 8 1
121 131.27 radiation 20 43200 > th dose independent rect. 8 3
123 131.32 radiation 10 43200 > th dose independent rect. 6 3
137 131.39 wind 1 43200 < th dose dependent rect. 11 1
141 131.78 radiation 1 43200 > th dose dependent rect. 18 1
156 131.95 radiation 30 43200 < th dose dependent rect. 8 3
158 132.06 wind 9 43200 < th dose dependent rect. 14 2
178 132.35 wind 5 43200 < th dose independent rect. 14 6
185 132.66 humidity 90 14400 > th dose independent rect. 22 2
206 132.80 wind 5 43200 > th dose independent rect. 14 6
209 132.87 radiation 30 43200 < th dose dependent rect. 13 1
213 132.94 humidity 90 14400 > th dose dependent rect. 21 10
215 132.95 humidity 90 14400 > th dose dependent rect. 19 11
219 133.07 radiation 10 43200 < th dose independent rect. 10 1
223 133.13 radiation 20 43200 > th dose independent sin 8 NA
224 133.14 humidity 90 14400 > th dose independent rect. 21 7
241 133.24 radiation 30 43200 < th dose dependent rect. 8 6
246 133.30 humidity 90 14400 > th dose dependent rect. 21 6
313 133.86 radiation 1 43200 > th dose dependent rect. 9 1
318 133.88 humidity 90 14400 > th dose independent rect. 21 4
320 133.89 humidity 90 14400 > th dose dependent sin 10 NA
324 133.91 humidity 90 43200 > th dose dependent rect. 12 3
325 133.91 humidity 90 14400 > th dose dependent rect. 22 4
356 134.09 wind 1 43200 < th dose dependent rect. 19 1
358 134.10 humidity 90 14400 > th dose dependent rect. 23 2
385 134.32 humidity 90 43200 > th dose independent rect. 12 3
399 134.41 radiation 20 43200 < th dose independent rect. 8 6
418 134.50 wind 3 43200 > th dose dependent rect. 14 6
419 134.51 radiation 40 43200 > th dose independent rect. 11 3
444 134.59 radiation 1 43200 > th dose dependent rect. 13 1
457 134.66 wind 9 43200 > th dose dependent rect. 16 1
459 134.67 radiation 10 43200 < th dose independent rect. 13 1
465 134.69 wind 7 43200 > th dose independent rect. 22 1
478 134.75 humidity 90 14400 > th dose dependent rect. 5 1
508 134.88 radiation 30 43200 < th dose dependent rect. 23 15
543 135.08 humidity 80 43200 < th dose independent rect. 2 7
551 135.14 radiation 40 43200 > th dose independent rect. 13 1
569 135.19 radiation 1 43200 > th dose dependent rect. 9 5
591 135.37 humidity 90 14400 > th dose dependent rect. 4 3
616 135.46 wind 7 43200 < th dose independent rect. 22 1
664 135.63 wind 9 43200 < th dose dependent rect. 13 8
677 135.66 humidity 80 43200 < th dose independent rect. 23 10
691 135.67 humidity 80 43200 < th dose independent rect. 20 13
819 136.12 wind 7 43200 < th dose dependent rect. 11 10
863 136.30 wind 9 43200 > th dose independent rect. 16 1
903 136.42 radiation 30 43200 < th dose dependent sin 6 NA
961 136.49 humidity 90 14400 > th dose dependent rect. 3 5