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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0512900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.9 (0.0329) R2 : 0.00256
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.075 (0.0693) R2dN8 : 0.0033 R2N8 : 0.00256
σ : 0.62
deviance : 176.48
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
172.92 0.618 2.91 -0.00114 0.0282 0.103 0.401 -1.68 0.0432 18.3 30.28 413 -- --
174.71 0.62 2.89 0.0707 0.0315 0.164 0.432 -- 0.087 0.165 37.26 261 -- --
173.26 0.613 2.91 -0.00169 0.0247 0.112 -- -1.49 0.0462 18.2 30.01 413 -- --
175.31 0.621 2.9 0.0591 0.0551 0.174 -- -- 0.0857 20.4 39.09 319 -- --
173.29 0.613 2.91 0.00116 -- 0.115 -- -1.48 0.0464 -- 30.01 413 -- --
175.53 0.621 2.89 0.0701 0.0356 -- -0.442 -- 0.0842 13.4 -- -- -- --
176.24 0.622 2.9 0.0559 0.0546 -- -- -- 0.0824 16.5 -- -- -- --
175.47 0.62 2.89 0.0584 -- 0.159 -- -- 0.0848 -- 39.09 319 -- --
175.4 0.62 2.9 -- 0.0547 0.173 -- -- 0.0791 20.5 39.09 319 -- --
176.4 0.621 2.9 0.0537 -- -- -- -- 0.0809 -- -- -- -- --
176.33 0.621 2.9 -- 0.0536 -- -- -- 0.0762 16.5 -- -- -- --
175.45 0.619 2.9 -- -- 0.177 -- -- 0.0757 -- 46.01 315 -- --
176.48 0.62 2.9 -- -- -- -- -- 0.075 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 164.61 radiation 10.0 90 > th dose independent rect. 16 2
15 164.66 radiation 10.0 90 > th dose dependent rect. 16 1
29 164.71 temperature 10.0 1440 > th dose independent rect. 17 1
33 164.71 radiation 30.0 1440 < th dose independent rect. 17 1
39 164.71 temperature 10.0 1440 > th dose independent rect. 18 23
42 164.72 precipitation 0.1 30 < th dose independent rect. 17 23
43 164.72 precipitation 0.1 30 < th dose dependent rect. 17 23
44 164.73 atmosphere 1005.0 30 > th dose independent rect. 16 1
45 164.74 temperature 25.0 30 > th dose independent rect. 16 1
47 164.74 atmosphere 1000.0 30 > th dose dependent rect. 16 1
49 164.77 humidity 80.0 30 < th dose independent rect. 16 1
52 164.78 humidity 50.0 30 > th dose independent rect. 16 1
53 164.78 radiation 30.0 30 < th dose independent rect. 16 1
55 164.79 wind 1.0 30 > th dose dependent rect. 16 1
56 164.80 wind 5.0 30 > th dose independent rect. 16 1
72 164.80 temperature 15.0 30 > th dose dependent rect. 16 1
73 164.81 wind 1.0 30 > th dose independent rect. 16 1
74 164.81 wind 9.0 30 < th dose independent rect. 16 1
75 164.81 temperature 10.0 30 > th dose independent rect. 16 1
77 164.81 temperature 30.0 30 < th dose independent rect. 16 1
78 164.81 atmosphere 1010.0 30 < th dose independent rect. 16 1
82 164.81 precipitation 0.1 30 < th dose independent rect. 16 1
83 164.81 temperature 10.0 30 > th dose independent rect. 17 23
86 164.81 precipitation 0.1 30 < th dose dependent rect. 16 1
87 164.82 atmosphere 995.0 30 > th dose independent rect. 16 1
93 164.84 radiation 40.0 30 < th dose dependent rect. 16 1
110 164.88 humidity 90.0 30 < th dose dependent rect. 16 1
112 164.90 humidity 50.0 30 > th dose dependent rect. 16 1
113 164.90 atmosphere 1015.0 30 < th dose dependent rect. 16 1
115 164.91 wind 9.0 30 < th dose dependent rect. 16 1
123 165.06 atmosphere 995.0 30 > th dose independent rect. 17 23
182 165.56 wind 9.0 30 < th dose independent rect. 17 23
191 165.78 temperature 30.0 30 < th dose dependent rect. 16 1
219 167.45 atmosphere 1000.0 90 < th dose independent rect. 20 1
222 167.45 atmosphere 1000.0 90 < th dose dependent rect. 20 1
266 168.08 humidity 50.0 10 > th dose independent rect. 17 23
268 168.10 humidity 70.0 30 < th dose independent rect. 16 4
337 169.45 temperature 25.0 30 > th dose dependent rect. 21 1
349 169.48 temperature 30.0 270 > th dose independent rect. 13 1
362 169.87 atmosphere 1015.0 30 < th dose independent rect. 17 23
428 170.67 temperature 10.0 30 > th dose dependent rect. 17 23
429 170.72 temperature 30.0 30 < th dose independent rect. 17 23
432 170.76 temperature 30.0 10 > th dose independent rect. 10 1
434 170.79 atmosphere 995.0 720 > th dose independent rect. 13 16
437 170.84 atmosphere 1000.0 270 < th dose dependent rect. 18 4
440 170.91 wind 1.0 30 > th dose independent rect. 17 23
442 170.93 radiation 30.0 270 > th dose independent sin 13 NA
444 170.94 radiation 30.0 270 > th dose independent rect. 14 18
453 171.08 wind 1.0 1440 < th dose independent rect. 3 1
457 171.12 atmosphere 995.0 720 > th dose independent rect. 1 16
460 171.13 wind 1.0 1440 > th dose independent rect. 3 1
461 171.13 temperature 30.0 270 > th dose independent rect. 18 1
475 171.15 radiation 40.0 270 > th dose independent rect. 13 20
480 171.20 atmosphere 1000.0 270 < th dose independent rect. 18 1
481 171.20 atmosphere 1000.0 270 < th dose dependent rect. 18 1
485 171.22 atmosphere 995.0 720 > th dose independent rect. 17 8
500 171.31 wind 1.0 270 < th dose dependent rect. 19 2
503 171.33 radiation 30.0 270 > th dose independent rect. 14 2
524 171.39 wind 1.0 30 < th dose independent rect. 10 3
531 171.42 humidity 80.0 30 < th dose dependent rect. 16 12
550 171.45 wind 9.0 4320 > th dose independent rect. 3 1
582 171.45 wind 9.0 4320 > th dose dependent rect. 3 1
615 171.45 humidity 80.0 30 < th dose dependent rect. 16 10
621 171.47 wind 1.0 270 < th dose independent rect. 19 1
647 171.49 humidity 80.0 30 < th dose dependent rect. 16 8
649 171.50 wind 1.0 720 < th dose dependent rect. 17 1
682 171.58 temperature 25.0 30 > th dose dependent rect. 16 8
691 171.63 atmosphere 995.0 1440 > th dose independent rect. 18 23
703 171.71 temperature 25.0 30 > th dose dependent rect. 16 15
763 171.79 precipitation 0.1 720 < th dose independent rect. 13 16
769 171.79 precipitation 0.1 720 < th dose dependent rect. 13 16
771 171.81 humidity 70.0 270 < th dose independent rect. 18 15
778 171.83 precipitation 0.1 720 < th dose independent rect. 17 8
781 171.83 precipitation 0.1 720 < th dose dependent rect. 17 8
837 171.89 wind 1.0 1440 < th dose dependent rect. 8 4
868 171.95 wind 1.0 1440 < th dose independent rect. 8 1
869 171.95 humidity 50.0 720 > th dose independent rect. 5 8
871 171.95 radiation 20.0 270 > th dose dependent sin 13 NA
872 171.96 humidity 70.0 270 < th dose dependent rect. 19 13
882 172.00 radiation 20.0 270 > th dose dependent rect. 13 19
888 172.02 wind 1.0 30 < th dose dependent rect. 10 3
894 172.04 temperature 25.0 270 > th dose dependent rect. 13 2
902 172.06 temperature 10.0 720 > th dose independent rect. 5 8
903 172.06 atmosphere 995.0 720 > th dose independent rect. 5 8
904 172.06 atmosphere 1015.0 720 < th dose independent rect. 5 8
906 172.06 temperature 10.0 720 > th dose independent rect. 13 16
909 172.07 radiation 10.0 10 < th dose independent rect. 11 6
934 172.11 radiation 20.0 720 < th dose independent rect. 17 8
940 172.12 wind 1.0 1440 < th dose dependent rect. 8 2
945 172.13 radiation 20.0 270 > th dose dependent rect. 14 1
946 172.13 temperature 25.0 270 > th dose dependent rect. 13 4
947 172.15 temperature 10.0 720 > th dose independent rect. 17 8
950 172.15 temperature 10.0 720 > th dose independent rect. 1 16
956 172.16 radiation 40.0 10 < th dose independent rect. 17 23