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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0512800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.45 (0.0567) R2 : 0.413
β1 : 0.11 (0.208) R2dD : 4e-04 R2D : -0.0154
β2 : 0.0776 (0.14) R2dC : 0.000397 R2C : -0.0164
β3 : 2.52 (0.189) R2dE : 0.265 R2E : 0.158
β4 : 3.68 (0.617) R2dD*C : 0.0465 R2D*C : 0.0194
β5 : 9.69 (0.806) R2dD*E : 0.212 R2D*E : 0.0554
γ1 : -0.35 (0.124) R2dN8 : 0.0154 R2N8 : 0.0179
σ : 1.04
deviance : 486.21
__
_____
C
peak time of C : 16.1
E
wheather : wind
threshold : 5.54
memory length : 4514
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 19.9
open length of G : 2.28

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
486.21 1.04 3.45 0.11 0.0776 2.52 3.68 9.69 -0.35 16.1 5.54 4514 19.9 2.28
593.44 1.13 3.29 0.326 0.169 2.72 2.78 -- -0.0978 15.4 6.833 10886 19.9 1.17
520.49 1.06 3.43 0.199 0.1 2.61 -- 9.8 -0.336 14.8 5.627 4507 19.9 2.38
592.66 1.13 3.31 -0.181 0.143 2.55 -- -- -0.221 13.4 10.41 4533 19.8 3.1
521.53 1.06 3.43 0.18 -- 2.58 -- 9.72 -0.323 -- 5.652 4507 19.9 2.38
776.07 1.31 3.4 0.058 0.0267 -- 3.3 -- -0.519 16.2 -- -- -- --
804.62 1.33 3.39 0.0938 0.183 -- -- -- -0.501 10.9 -- -- -- --
571.82 1.11 3.33 -0.29 -- 2.76 -- -- -0.233 -- 10.4 4532 19.8 1.23
577.09 1.12 3.35 -- 0.123 3.93 -- -- -0.271 11.4 10.37 4535 19.8 2.79
806.71 1.33 3.39 0.0899 -- -- -- -- -0.502 -- -- -- -- --
804.86 1.33 3.39 -- 0.182 -- -- -- -0.512 10.9 -- -- -- --
575.64 1.12 3.33 -- -- 2.98 -- -- -0.233 -- 10.4 4532 19.8 1.23
806.92 1.33 3.39 -- -- -- -- -- -0.512 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 499.58 wind 5 4320 > th dose dependent rect. 19 4
3 501.09 humidity 90 1440 < th dose dependent rect. 3 1
9 508.39 wind 5 4320 > th dose independent rect. 20 2
16 513.38 wind 7 4320 < th dose independent rect. 18 7
19 516.07 wind 7 4320 < th dose independent rect. 18 4
34 521.61 wind 7 4320 > th dose independent rect. 18 4
35 521.70 wind 7 4320 > th dose independent rect. 18 7
54 525.82 humidity 90 1440 < th dose dependent rect. 2 4
71 528.11 humidity 90 1440 < th dose dependent rect. 23 8
88 530.35 humidity 80 1440 < th dose independent rect. 22 2
154 535.76 atmosphere 995 14400 < th dose independent rect. 17 1
155 535.76 atmosphere 995 14400 < th dose dependent rect. 17 1
179 536.23 humidity 50 1440 > th dose dependent rect. 3 1
188 537.56 atmosphere 995 14400 > th dose independent rect. 16 2
194 538.00 atmosphere 995 14400 > th dose independent rect. 16 4
219 541.19 humidity 70 1440 > th dose dependent rect. 1 5
248 545.62 humidity 90 1440 < th dose dependent rect. 5 1
279 548.26 atmosphere 995 14400 > th dose independent rect. 13 7
312 548.54 humidity 70 1440 > th dose dependent rect. 5 1
315 548.77 atmosphere 995 14400 > th dose independent rect. 8 12
321 549.26 atmosphere 995 14400 > th dose independent rect. 10 10
418 554.24 humidity 80 1440 < th dose dependent rect. 22 1
444 555.06 temperature 20 1440 > th dose independent rect. 18 1
475 558.82 wind 7 4320 > th dose independent rect. 8 1
516 561.37 humidity 80 1440 > th dose independent rect. 22 4
529 562.39 wind 7 4320 < th dose independent rect. 8 1
563 566.36 temperature 20 720 < th dose independent rect. 18 1
573 566.40 humidity 80 1440 < th dose dependent rect. 21 4
649 568.75 atmosphere 995 14400 > th dose independent rect. 19 21
658 569.20 humidity 80 1440 > th dose independent rect. 22 9
668 569.58 humidity 80 1440 < th dose independent rect. 21 10
690 570.63 atmosphere 995 14400 > th dose independent sin 22 NA
700 570.99 atmosphere 995 14400 < th dose independent sin 22 NA
725 571.61 atmosphere 995 14400 > th dose independent sin 4 NA
738 571.78 atmosphere 995 14400 < th dose dependent sin 0 NA
762 572.69 atmosphere 995 14400 < th dose independent sin 3 NA
802 573.71 humidity 80 270 < th dose dependent rect. 21 10
825 573.96 humidity 90 1440 > th dose independent rect. 5 1