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Os11g0508600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to MtN3 protein precursor.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.3 (0.0309) R2 : 0.818
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.88 (0.0955) R2dC : 0.251 R2C : 0.545
β3 : -2.46 (0.128) R2dE : 0.252 R2E : 0.559
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.26 (0.066) R2dN8 : 0.00988 R2N8 : 0.0175
σ : 0.577
deviance : 153.67
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C
peak time of C : 2.19
E
wheather : temperature
threshold : 2.428
memory length : 83
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 5.62
open length of G : 20.7

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
127.8 0.531 10.3 0.711 1.68 -2.85 -1.9 0.373 -0.14 2.14 7.846 44 5.87 20.8
126.88 0.525 10.3 0.667 1.69 -2.85 -2.05 -- -0.151 1.99 5.943 80 5.68 20.8
135.64 0.542 10.3 0.834 1.76 -2.79 -- 2.39 -0.121 2.35 6.464 36 5.82 20.9
142.05 0.555 10.3 0.685 1.75 -2.7 -- -- -0.156 2.13 5.881 81 5.67 20.7
217.29 0.687 10.3 1.23 -- -4.22 -- 2.75 0.0951 -- 10.78 35 5.93 19.7
243.58 0.732 10.4 0.41 3.16 -- -1.12 -- -0.51 3.07 -- -- -- --
247.71 0.737 10.4 0.434 3.16 -- -- -- -0.504 3.11 -- -- -- --
223.26 0.696 10.3 1.05 -- -4.14 -- -- 0.104 -- 10.86 31 5.93 19.8
153.67 0.577 10.3 -- 1.88 -2.46 -- -- -0.26 2.19 2.428 83 5.62 20.7
817.65 1.34 10.4 0.568 -- -- -- -- -0.421 -- -- -- -- --
252.67 0.744 10.4 -- 3.17 -- -- -- -0.552 3.11 -- -- -- --
231.12 0.708 10.4 -- -- -3.5 -- -- -0.418 -- -14.78 235 5 17.4
826.17 1.34 10.4 -- -- -- -- -- -0.484 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 132.60 temperature 10.0 10 > th dose dependent rect. 6 21
31 162.77 temperature 10.0 10 > th dose dependent rect. 6 10
38 165.17 temperature 10.0 720 > th dose dependent rect. 5 2
39 165.22 wind 9.0 10 < th dose independent rect. 6 20
42 165.42 wind 9.0 10 < th dose dependent rect. 3 3
43 165.50 radiation 20.0 10 < th dose dependent rect. 14 16
44 165.60 wind 5.0 10 < th dose independent rect. 3 3
52 166.26 precipitation 0.1 10 < th dose independent rect. 2 4
53 166.26 precipitation 0.1 10 < th dose dependent rect. 2 4
55 166.31 temperature 10.0 10 > th dose independent rect. 2 4
57 166.31 temperature 30.0 10 < th dose independent rect. 2 4
58 166.31 humidity 50.0 10 > th dose independent rect. 2 4
61 166.31 atmosphere 995.0 10 > th dose independent rect. 2 4
62 166.31 atmosphere 1010.0 10 < th dose independent rect. 2 4
64 166.31 radiation 20.0 10 < th dose independent rect. 2 4
67 166.31 temperature 10.0 10 > th dose independent rect. 6 20
88 166.69 precipitation 0.1 10 < th dose independent rect. 6 20
89 166.69 precipitation 0.1 10 < th dose dependent rect. 6 20
99 167.09 radiation 40.0 10 < th dose dependent rect. 3 3
147 168.06 humidity 50.0 10 > th dose dependent rect. 2 4
156 168.45 wind 9.0 1440 < th dose independent rect. 3 4
157 168.45 temperature 10.0 1440 > th dose independent rect. 3 4
160 168.45 temperature 30.0 1440 < th dose independent rect. 3 4
164 168.45 humidity 50.0 1440 > th dose independent rect. 3 4
169 168.45 atmosphere 995.0 1440 > th dose independent rect. 3 4
170 168.45 radiation 40.0 1440 < th dose independent rect. 3 4
174 168.45 temperature 10.0 1440 > th dose independent rect. 7 20
183 168.71 temperature 10.0 10 > th dose dependent rect. 3 3
193 169.17 atmosphere 1015.0 10 < th dose independent rect. 6 20
201 169.39 radiation 1.0 90 < th dose independent rect. 3 3
218 169.90 radiation 1.0 90 < th dose dependent rect. 3 3
268 170.88 temperature 20.0 10 > th dose independent rect. 6 10
273 171.06 wind 7.0 270 < th dose independent rect. 1 2
276 171.15 wind 9.0 270 < th dose independent rect. 3 22
285 171.44 precipitation 0.1 270 < th dose independent rect. 1 2
286 171.44 precipitation 0.1 270 < th dose dependent rect. 1 2
292 171.51 temperature 10.0 270 > th dose independent rect. 1 2
294 171.51 temperature 30.0 270 < th dose independent rect. 1 2
295 171.51 humidity 50.0 270 > th dose independent rect. 1 2
298 171.51 atmosphere 995.0 270 > th dose independent rect. 1 2
299 171.51 atmosphere 1010.0 270 < th dose independent rect. 1 2
301 171.51 radiation 1.0 270 < th dose independent rect. 1 2
306 171.51 temperature 10.0 270 > th dose independent rect. 3 22
307 171.51 radiation 1.0 270 < th dose dependent rect. 1 2
334 172.10 atmosphere 995.0 10 > th dose dependent rect. 3 3
355 172.39 radiation 1.0 90 < th dose dependent rect. 2 17
376 173.34 humidity 50.0 270 > th dose dependent rect. 1 2
382 173.67 wind 1.0 270 > th dose independent rect. 1 2
410 173.85 radiation 1.0 90 < th dose independent rect. 2 17
419 174.22 temperature 30.0 90 < th dose dependent rect. 3 2
421 174.28 atmosphere 995.0 10 > th dose independent rect. 6 20
428 174.53 atmosphere 1015.0 90 < th dose dependent rect. 3 2
430 174.54 radiation 1.0 90 < th dose dependent rect. 3 8
456 174.72 radiation 40.0 270 < th dose independent rect. 14 14
458 174.75 humidity 50.0 10 > th dose dependent rect. 16 14
481 175.22 humidity 50.0 10 > th dose independent rect. 16 14
484 175.28 atmosphere 1015.0 1440 < th dose independent rect. 3 4
486 175.42 wind 9.0 270 < th dose independent rect. 4 11
492 175.50 humidity 50.0 270 > th dose independent rect. 4 11
498 175.57 wind 9.0 10 < th dose independent rect. 6 10
556 176.49 radiation 1.0 90 < th dose dependent rect. 3 14
600 177.24 radiation 20.0 720 < th dose independent rect. 5 2
601 177.27 temperature 10.0 270 > th dose dependent rect. 1 2
602 177.28 precipitation 0.1 270 < th dose independent rect. 15 13
603 177.28 precipitation 0.1 270 < th dose dependent rect. 15 13
604 177.29 precipitation 0.1 270 < th dose independent rect. 4 11
605 177.29 atmosphere 1015.0 10 < th dose dependent rect. 2 4
606 177.29 precipitation 0.1 270 < th dose dependent rect. 4 11
609 177.31 temperature 10.0 270 > th dose independent rect. 4 11
610 177.31 atmosphere 1015.0 270 < th dose independent rect. 4 11
611 177.31 temperature 10.0 270 > th dose independent rect. 15 13
620 177.45 wind 9.0 270 < th dose independent rect. 15 13
625 177.58 wind 9.0 10 < th dose independent rect. 16 14
633 177.70 humidity 50.0 10 > th dose independent rect. 6 10
639 177.79 radiation 20.0 10 < th dose independent rect. 16 14
644 177.85 atmosphere 1015.0 10 < th dose dependent rect. 6 20
650 177.98 temperature 10.0 10 > th dose independent rect. 6 10
652 177.98 atmosphere 1015.0 10 < th dose independent rect. 6 10
653 177.98 temperature 10.0 10 > th dose independent rect. 16 14
654 177.98 radiation 40.0 10 < th dose independent rect. 16 14
656 177.99 radiation 1.0 90 < th dose independent rect. 2 9
665 178.10 radiation 1.0 90 < th dose dependent sin 3 NA
690 178.32 precipitation 0.1 10 < th dose independent rect. 6 10
691 178.32 precipitation 0.1 10 < th dose dependent rect. 6 10
698 178.49 humidity 50.0 720 > th dose dependent rect. 5 2
703 178.58 radiation 20.0 90 < th dose independent rect. 15 15
721 178.87 atmosphere 995.0 10 > th dose independent rect. 16 14
727 178.91 humidity 50.0 10 > th dose independent rect. 6 21
731 178.94 atmosphere 995.0 270 > th dose independent rect. 4 11
745 179.25 wind 1.0 10 > th dose independent rect. 6 20
747 179.26 precipitation 0.1 720 < th dose independent rect. 17 2
748 179.26 precipitation 0.1 720 < th dose dependent rect. 17 2
799 179.74 precipitation 0.1 10 < th dose independent rect. 16 14
800 179.74 precipitation 0.1 10 < th dose dependent rect. 16 14
809 179.99 temperature 30.0 10 < th dose independent rect. 16 14
832 180.30 atmosphere 995.0 10 > th dose independent rect. 6 10
850 180.36 radiation 1.0 90 > th dose independent sin 3 NA
859 180.38 wind 9.0 30 < th dose dependent rect. 6 20
863 180.42 wind 1.0 720 > th dose independent rect. 17 2
933 180.95 radiation 1.0 10 > th dose independent rect. 6 10
943 181.05 temperature 30.0 10 < th dose dependent rect. 2 4
945 181.08 temperature 30.0 90 < th dose independent rect. 2 17
946 181.13 wind 9.0 720 < th dose independent rect. 17 2
980 181.53 temperature 30.0 10 < th dose dependent rect. 2 17
985 181.57 temperature 30.0 90 < th dose dependent rect. 2 17