Os11g0502700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
FiT-DB / Search/ Help/ Sample detail
|
Os11g0502700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Conserved hypothetical protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 237.7 | 0.724 | 11.6 | 0.307 | 0.523 | 2.64 | 1.17 | 0.718 | 0.253 | 21.9 | 0.98 | 14349 | 6.89 | -- |
| 236.38 | 0.716 | 11.6 | 0.219 | 0.434 | 2.83 | 0.995 | -- | 0.199 | 21.9 | 1.11 | 14336 | 6.13 | -- |
| 238.6 | 0.719 | 11.6 | -0.0937 | 0.542 | 2.61 | -- | -0.0924 | 0.245 | 21.7 | 1.01 | 14355 | 5.52 | -- |
| 236.08 | 0.716 | 11.6 | -0.237 | 0.455 | 2.92 | -- | -- | 0.125 | 21.2 | 1 | 14329 | 5.02 | -- |
| 249.84 | 0.736 | 11.6 | -0.0882 | -- | 3.07 | -- | 0.0945 | 0.0916 | -- | 1.11 | 14250 | 5.4 | -- |
| 451.52 | 0.996 | 11.5 | 0.597 | 0.584 | -- | 1.33 | -- | 0.942 | 22.6 | -- | -- | -- | -- |
| 458.57 | 1 | 11.5 | 0.546 | 0.586 | -- | -- | -- | 0.94 | 22.1 | -- | -- | -- | -- |
| 241.08 | 0.723 | 11.6 | -1.19 | -- | 3.72 | -- | -- | -0.00372 | -- | 1.11 | 14280 | 0.117 | -- |
| 237.6 | 0.718 | 11.6 | -- | 0.493 | 2.78 | -- | -- | 0.148 | 21.6 | 1.02 | 14343 | 5.36 | -- |
| 479.31 | 1.02 | 11.5 | 0.554 | -- | -- | -- | -- | 0.941 | -- | -- | -- | -- | -- |
| 466.43 | 1.01 | 11.5 | -- | 0.588 | -- | -- | -- | 0.879 | 22.2 | -- | -- | -- | -- |
| 250.23 | 0.737 | 11.6 | -- | -- | 3.01 | -- | -- | 0.14 | -- | 1.017 | 14264 | 5 | -- |
| 487.4 | 1.03 | 11.5 | -- | -- | -- | -- | -- | 0.879 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 222.44 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 18 |
| 5 | 223.61 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 18 |
| 8 | 223.86 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 22 |
| 14 | 224.90 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 22 |
| 18 | 226.08 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 4 | 8 |
| 38 | 226.17 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 4 | 9 |
| 81 | 226.70 | radiation | 1.0 | 14400 | < th | dose independent | sin | 5 | NA |
| 83 | 226.75 | radiation | 1.0 | 14400 | > th | dose independent | sin | 5 | NA |
| 211 | 229.36 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 18 | 11 |
| 238 | 230.46 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 18 | 11 |
| 241 | 230.80 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 15 | 21 |
| 252 | 231.50 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 3 | 1 |
| 259 | 231.83 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 15 | 21 |
| 270 | 232.20 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 18 | 8 |
| 272 | 232.23 | radiation | 1.0 | 14400 | > th | dose independent | no | NA | NA |
| 323 | 232.34 | radiation | 40.0 | 14400 | < th | dose dependent | rect. | 18 | 2 |
| 332 | 232.46 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 7 | 23 |
| 396 | 233.20 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 4 | 16 |
| 423 | 233.22 | radiation | 1.0 | 14400 | < th | dose independent | no | NA | NA |
| 475 | 233.71 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 11 | 23 |
| 484 | 233.94 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 7 | 23 |
| 496 | 234.41 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 18 | 11 |
| 576 | 236.06 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 587 | 236.08 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 18 | 23 |
| 619 | 236.76 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 5 | 7 |
| 620 | 236.86 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 18 | 18 |
| 632 | 237.31 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 22 | 14 |
| 635 | 237.34 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 3 | 1 |
| 638 | 237.46 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 665 | 237.95 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 15 | 21 |
| 667 | 238.01 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 17 | 4 |
| 680 | 238.20 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 2 | 5 |
| 709 | 238.43 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 3 | 1 |
| 724 | 238.55 | radiation | 1.0 | 14400 | < th | dose dependent | sin | 5 | NA |
| 728 | 238.57 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 750 | 238.70 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 7 | 23 |
| 780 | 238.98 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 14 | 13 |
| 782 | 238.99 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 786 | 239.01 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 5 | 12 |
| 792 | 239.05 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 5 | 21 |
| 816 | 239.22 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 3 |
| 817 | 239.22 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 22 | 19 |
| 820 | 239.24 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 829 | 239.31 | wind | 5.0 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 847 | 239.39 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 5 | 16 |
| 855 | 239.41 | humidity | 70.0 | 43200 | < th | dose dependent | rect. | 16 | 2 |
| 861 | 239.49 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 14 | 8 |
| 873 | 239.61 | radiation | 1.0 | 14400 | < th | dose dependent | no | NA | NA |
| 875 | 239.61 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 23 | 22 |
| 888 | 239.66 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 2 | 5 |
| 899 | 239.72 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 2 | 5 |
| 900 | 239.72 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 2 | 5 |
| 924 | 239.86 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 7 | 21 |
| 925 | 239.87 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 7 | 19 |
| 933 | 239.90 | atmosphere | 1005.0 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 997 | 240.42 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 7 | 14 |
| 999 | 240.44 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 8 | 1 |