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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0501500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.04 (0.0277) R2 : 7.2e-07
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.00106 (0.0583) R2dN8 : 9.3e-07 R2N8 : 7.2e-07
σ : 0.522
deviance : 124.97
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
94.03 0.456 3.51 -2.91 0.184 108 -0.0747 -630 0.00254 8.4 1000 90 2 1
122.48 0.519 3.04 -0.0559 0.209 -0.252 -0.05 -- -0.0113 7.63 997.8 43 1.98 3.28
94.05 0.452 3.51 -2.91 0.184 108 -- -630 0.0027 8.51 1000 90 2 0.999
109.63 0.491 3.03 -0.085 0.184 2.56 -- -- 0.00218 8.48 998 2 2.02 1.99
95.94 0.456 3.51 -2.9 -- 108 -- -630 0.00462 -- 1000 90 2 1.02
122.56 0.519 3.04 -0.0578 0.208 -- -0.0525 -- -0.0104 7.68 -- -- -- --
122.57 0.518 3.04 -0.0591 0.208 -- -- -- -0.0103 7.7 -- -- -- --
111.51 0.494 3.04 -0.0845 -- 2.6 -- -- 0.0041 -- 998.3 2 2.19 2.1
109.82 0.491 3.03 -- 0.184 2.55 -- -- 0.0116 8.51 998.5 2 2.27 2.3
124.89 0.522 3.04 -0.0564 -- -- -- -- -0.00731 -- -- -- -- --
122.66 0.518 3.04 -- 0.207 -- -- -- -0.00375 7.72 -- -- -- --
111.7 0.494 3.04 -- -- 2.58 -- -- 0.0134 -- 998.3 2 2.19 2.1
124.97 0.522 3.04 -- -- -- -- -- -0.00106 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 94.03 atmosphere 1000.0 90 < th dose independent rect. 2 1
4 94.03 atmosphere 1000.0 90 < th dose dependent rect. 2 1
34 102.67 wind 1.0 90 < th dose dependent rect. 3 1
37 103.35 wind 1.0 90 < th dose independent rect. 2 1
200 115.66 temperature 20.0 10 > th dose independent rect. 2 1
201 115.75 atmosphere 1005.0 10 > th dose independent rect. 2 1
206 115.89 humidity 80.0 30 > th dose independent rect. 2 1
207 115.89 atmosphere 1000.0 30 > th dose dependent rect. 2 1
210 115.92 temperature 10.0 30 > th dose dependent rect. 2 1
212 115.93 wind 9.0 30 < th dose independent rect. 2 1
214 115.93 temperature 10.0 30 > th dose independent rect. 2 1
216 115.93 temperature 30.0 30 < th dose independent rect. 2 1
217 115.93 humidity 50.0 30 > th dose independent rect. 2 1
221 115.93 atmosphere 1010.0 30 < th dose independent rect. 2 1
223 115.93 radiation 1.0 30 < th dose independent rect. 2 1
228 115.93 precipitation 0.1 30 < th dose independent rect. 2 1
229 115.93 temperature 10.0 30 > th dose independent rect. 3 23
233 115.93 radiation 1.0 30 < th dose dependent rect. 2 1
238 115.93 precipitation 0.1 30 < th dose dependent rect. 2 1
242 115.96 humidity 50.0 30 > th dose dependent rect. 2 1
243 115.97 wind 1.0 30 > th dose independent rect. 2 1
246 115.98 wind 9.0 30 < th dose dependent rect. 2 1
257 116.05 atmosphere 1015.0 30 < th dose dependent rect. 2 1
258 116.08 temperature 30.0 30 < th dose dependent rect. 2 1
308 116.71 atmosphere 1000.0 10 > th dose independent rect. 3 23
326 117.05 radiation 10.0 43200 < th dose dependent rect. 3 1
328 117.06 wind 9.0 1440 < th dose independent rect. 3 1
329 117.06 temperature 10.0 1440 > th dose independent rect. 3 1
332 117.06 temperature 30.0 1440 < th dose independent rect. 3 1
336 117.06 humidity 50.0 1440 > th dose independent rect. 3 1
345 117.06 atmosphere 995.0 1440 > th dose independent rect. 3 1
346 117.06 radiation 1.0 1440 < th dose independent rect. 3 1
366 117.06 temperature 10.0 1440 > th dose independent rect. 4 23
369 117.06 radiation 1.0 1440 < th dose dependent rect. 3 1
396 117.40 wind 9.0 30 < th dose independent rect. 3 23
410 117.62 precipitation 0.1 30 < th dose independent rect. 3 23
411 117.62 precipitation 0.1 30 < th dose dependent rect. 3 23
438 117.92 atmosphere 1000.0 10 < th dose independent rect. 22 7
439 117.94 humidity 80.0 30 > th dose independent rect. 11 1
458 118.13 atmosphere 1005.0 30 > th dose independent rect. 3 8
477 118.24 temperature 30.0 30 < th dose independent rect. 3 23
483 118.29 atmosphere 1000.0 270 > th dose independent rect. 21 10
486 118.33 atmosphere 1000.0 30 > th dose dependent rect. 3 8
588 118.84 atmosphere 1000.0 270 > th dose independent sin 9 NA
608 118.92 atmosphere 1000.0 270 < th dose independent sin 9 NA
611 118.93 humidity 50.0 30 > th dose independent rect. 3 23
623 118.97 wind 3.0 14400 > th dose dependent rect. 11 1
625 118.98 precipitation 0.1 30 > th dose independent rect. 4 10
638 118.99 precipitation 0.1 30 > th dose dependent rect. 5 9
643 119.00 atmosphere 1000.0 90 < th dose independent rect. 8 1
644 119.00 atmosphere 1000.0 10 < th dose independent rect. 9 1
669 119.02 atmosphere 1000.0 270 < th dose independent rect. 6 1
675 119.03 precipitation 0.1 90 > th dose independent rect. 4 3
686 119.03 precipitation 0.1 90 > th dose dependent rect. 4 3
717 119.04 precipitation 0.1 10 > th dose dependent rect. 5 3
762 119.07 wind 3.0 10 > th dose independent rect. 6 1
765 119.07 wind 3.0 90 > th dose dependent rect. 5 1
769 119.08 wind 3.0 10 > th dose dependent rect. 6 1
792 119.11 wind 3.0 90 > th dose independent rect. 4 2
807 119.13 wind 9.0 14400 < th dose dependent rect. 10 2
825 119.17 atmosphere 1000.0 270 > th dose independent rect. 3 1
831 119.17 humidity 70.0 10 > th dose dependent rect. 12 1
855 119.20 atmosphere 1000.0 30 < th dose dependent rect. 9 1
868 119.22 humidity 90.0 4320 < th dose independent rect. 24 1
884 119.24 atmosphere 1000.0 90 > th dose independent rect. 3 4
888 119.24 atmosphere 1000.0 10 < th dose independent rect. 18 11
934 119.30 atmosphere 1000.0 90 < th dose independent rect. 2 12
951 119.32 wind 1.0 43200 > th dose independent rect. 20 1
952 119.32 atmosphere 1000.0 720 > th dose independent rect. 21 4
957 119.33 atmosphere 1000.0 720 > th dose independent rect. 23 1
959 119.33 humidity 90.0 4320 < th dose independent rect. 22 7
979 119.35 atmosphere 1000.0 270 < th dose dependent rect. 6 1