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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0500100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF1544 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.22 (0.0272) R2 : 0.129
β1 : -0.726 (0.0998) R2dD : 0.105 R2D : 0.115
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.138 (0.0582) R2dN8 : 0.0144 R2N8 : 0.0242
σ : 0.511
deviance : 119.78
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
110.29 0.493 3.23 -0.743 0.0462 0.474 -0.274 -0.696 0.103 21.2 30.01 99 -- --
111.39 0.492 3.23 -0.729 0.0457 0.498 -0.0906 -- 0.108 20.6 30.46 99 -- --
110.49 0.49 3.23 -0.734 0.0494 0.481 -- -0.552 0.104 21 30.44 99 -- --
111.33 0.491 3.23 -0.745 0.0527 0.475 -- -- 0.106 20.3 30.46 99 -- --
110.62 0.49 3.23 -0.734 -- 0.461 -- -0.553 0.103 -- 30.46 99 -- --
117.34 0.508 3.21 -0.715 0.2 -- -0.0984 -- 0.143 14 -- -- -- --
117.37 0.507 3.21 -0.718 0.2 -- -- -- 0.143 13.9 -- -- -- --
111.48 0.492 3.22 -0.745 -- 0.461 -- -- 0.107 -- 30.45 99 -- --
125.37 0.521 3.21 -- 0.0249 0.513 -- -- 0.198 20.1 38.09 99 -- --
119.78 0.511 3.22 -0.726 -- -- -- -- 0.138 -- -- -- -- --
130.95 0.535 3.2 -- 0.213 -- -- -- 0.222 14 -- -- -- --
125.36 0.521 3.21 -- -- 0.562 -- -- 0.18 -- 38.08 100 -- --
133.68 0.54 3.2 -- -- -- -- -- 0.218 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 103.57 wind 1.0 270 < th dose dependent rect. 22 1
2 103.93 atmosphere 995.0 30 > th dose dependent rect. 9 6
5 104.50 radiation 40.0 90 < th dose independent rect. 11 22
6 104.90 wind 1.0 270 < th dose independent rect. 22 1
7 104.91 temperature 15.0 30 > th dose dependent rect. 2 7
9 105.05 temperature 30.0 30 < th dose independent rect. 9 6
18 105.36 atmosphere 1000.0 30 > th dose dependent rect. 2 7
20 105.41 radiation 1.0 30 > th dose independent rect. 9 6
21 105.53 wind 1.0 30 > th dose independent rect. 9 6
27 105.65 atmosphere 995.0 30 > th dose independent rect. 15 18
31 105.73 atmosphere 1000.0 30 > th dose independent rect. 9 6
34 105.82 temperature 10.0 1440 > th dose independent rect. 10 6
37 105.82 temperature 10.0 1440 > th dose independent rect. 16 18
42 105.96 wind 9.0 1440 < th dose independent rect. 3 7
43 105.98 precipitation 0.1 30 < th dose independent rect. 9 6
45 105.98 precipitation 0.1 30 < th dose dependent rect. 9 6
46 105.99 temperature 10.0 30 > th dose independent rect. 9 6
49 105.99 atmosphere 1015.0 30 < th dose independent rect. 9 6
50 105.99 temperature 10.0 30 > th dose independent rect. 15 18
51 106.00 radiation 40.0 30 < th dose independent rect. 15 18
54 106.06 precipitation 0.1 30 < th dose independent rect. 15 18
55 106.06 precipitation 0.1 30 < th dose dependent rect. 15 18
58 106.11 atmosphere 1015.0 30 < th dose independent rect. 15 18
59 106.12 wind 9.0 30 < th dose independent rect. 9 6
61 106.15 humidity 50.0 30 > th dose independent rect. 9 6
62 106.16 wind 9.0 30 < th dose independent rect. 15 18
82 106.55 humidity 50.0 30 > th dose independent rect. 15 18
84 106.63 humidity 50.0 4320 > th dose independent rect. 3 7
89 106.74 wind 1.0 30 > th dose independent rect. 15 18
91 106.75 atmosphere 995.0 90 > th dose dependent rect. 9 2
92 106.76 atmosphere 995.0 30 > th dose dependent rect. 9 18
96 106.78 temperature 10.0 30 > th dose dependent rect. 15 18
103 106.88 wind 1.0 30 < th dose dependent rect. 23 3
113 106.94 radiation 40.0 10 < th dose dependent rect. 11 22
130 107.21 temperature 10.0 1440 > th dose independent rect. 3 7
133 107.21 atmosphere 995.0 1440 > th dose independent rect. 3 7
134 107.21 temperature 10.0 1440 > th dose independent rect. 10 17
139 107.27 temperature 20.0 10 > th dose independent rect. 3 6
140 107.28 wind 9.0 30 < th dose independent rect. 9 17
149 107.31 radiation 40.0 90 < th dose dependent rect. 11 22
150 107.32 wind 9.0 1440 < th dose independent rect. 7 3
151 107.32 wind 9.0 30 < th dose independent rect. 2 7
152 107.32 temperature 10.0 30 > th dose independent rect. 2 7
154 107.32 temperature 30.0 30 < th dose independent rect. 2 7
155 107.32 humidity 50.0 30 > th dose independent rect. 2 7
157 107.32 atmosphere 995.0 30 > th dose independent rect. 2 7
158 107.32 atmosphere 1015.0 30 < th dose independent rect. 2 7
159 107.32 temperature 10.0 30 > th dose independent rect. 9 17
161 107.33 precipitation 0.1 30 < th dose independent rect. 9 17
163 107.33 precipitation 0.1 30 < th dose dependent rect. 9 17
164 107.36 precipitation 0.1 30 < th dose independent rect. 2 7
165 107.36 precipitation 0.1 30 < th dose dependent rect. 2 7
166 107.37 radiation 40.0 30 < th dose independent rect. 2 7
167 107.39 atmosphere 1000.0 30 > th dose dependent rect. 24 9
224 107.68 temperature 30.0 30 < th dose independent rect. 15 18
243 107.73 wind 1.0 90 > th dose independent rect. 9 2
253 107.75 atmosphere 995.0 30 > th dose dependent rect. 15 18
276 107.81 temperature 15.0 10 > th dose dependent rect. 24 9
288 107.85 temperature 30.0 90 < th dose independent rect. 9 2
291 107.86 humidity 50.0 30 > th dose independent rect. 9 17
300 107.89 radiation 40.0 10 < th dose dependent rect. 15 18
308 107.95 radiation 30.0 90 < th dose independent rect. 3 18
314 107.98 atmosphere 995.0 30 > th dose independent rect. 9 17
316 107.99 temperature 30.0 30 < th dose independent rect. 9 18
329 108.04 radiation 40.0 90 < th dose independent rect. 11 10
334 108.05 atmosphere 995.0 90 > th dose independent rect. 11 22
336 108.05 radiation 30.0 10 < th dose dependent rect. 10 1
342 108.07 radiation 1.0 30 > th dose independent rect. 9 21
362 108.14 atmosphere 1015.0 1440 < th dose independent rect. 4 6
382 108.23 atmosphere 1000.0 90 > th dose independent rect. 9 2
387 108.25 temperature 30.0 30 < th dose dependent rect. 10 1
397 108.29 wind 9.0 90 < th dose dependent rect. 2 7
409 108.35 temperature 10.0 90 > th dose independent rect. 9 2
411 108.35 atmosphere 1015.0 90 < th dose independent rect. 9 2
416 108.35 temperature 10.0 90 > th dose independent rect. 11 22
418 108.36 humidity 60.0 270 > th dose independent rect. 9 1
424 108.39 wind 9.0 90 < th dose independent rect. 9 2
425 108.39 precipitation 0.1 90 < th dose independent rect. 9 2
427 108.39 atmosphere 1005.0 270 > th dose dependent rect. 4 1
428 108.39 precipitation 0.1 90 < th dose dependent rect. 9 2
433 108.42 wind 7.0 1440 > th dose independent rect. 2 1
438 108.42 wind 7.0 1440 > th dose dependent rect. 2 1
450 108.45 radiation 1.0 90 > th dose independent rect. 9 2
468 108.53 radiation 1.0 30 > th dose independent rect. 9 9
472 108.54 radiation 20.0 10 < th dose independent rect. 3 18
475 108.55 wind 1.0 30 > th dose independent rect. 2 7
480 108.56 radiation 1.0 1440 > th dose independent rect. 11 1
493 108.59 atmosphere 1015.0 90 < th dose independent rect. 11 22
494 108.59 precipitation 0.1 90 < th dose independent rect. 11 22
497 108.59 precipitation 0.1 90 < th dose dependent rect. 11 22
510 108.65 humidity 90.0 30 < th dose independent rect. 9 6
523 108.69 humidity 60.0 10 > th dose dependent rect. 10 1
532 108.72 wind 9.0 1440 < th dose independent rect. 9 1
563 108.77 temperature 30.0 30 < th dose independent rect. 9 4
569 108.78 temperature 10.0 30 > th dose dependent rect. 9 6
577 108.82 radiation 20.0 10 < th dose independent rect. 6 15
580 108.83 radiation 1.0 720 > th dose independent rect. 18 1
602 108.86 atmosphere 995.0 30 > th dose dependent rect. 9 15
605 108.87 atmosphere 995.0 30 > th dose dependent rect. 9 21
614 108.91 wind 9.0 90 < th dose independent rect. 11 22
695 109.11 wind 1.0 270 > th dose independent rect. 13 17
699 109.12 wind 1.0 90 > th dose independent rect. 9 18
741 109.20 wind 1.0 30 < th dose dependent rect. 10 16
762 109.26 atmosphere 1015.0 30 < th dose independent rect. 13 20
764 109.26 temperature 15.0 270 > th dose dependent rect. 3 3
777 109.31 wind 1.0 30 > th dose independent rect. 9 4
783 109.33 atmosphere 995.0 30 > th dose independent rect. 13 20
803 109.37 atmosphere 1000.0 30 > th dose dependent rect. 6 3
810 109.39 wind 1.0 270 > th dose independent rect. 15 15
816 109.40 temperature 15.0 30 > th dose dependent rect. 6 3
823 109.42 radiation 30.0 90 < th dose independent rect. 23 22
833 109.43 radiation 40.0 10 < th dose dependent rect. 11 10
836 109.44 atmosphere 1000.0 30 > th dose independent rect. 9 4
851 109.48 humidity 50.0 4320 > th dose independent rect. 7 3
852 109.48 wind 9.0 30 < th dose independent rect. 9 4
864 109.50 temperature 10.0 1440 > th dose independent rect. 10 4
867 109.50 atmosphere 995.0 1440 > th dose independent rect. 10 4
868 109.50 temperature 10.0 1440 > th dose independent rect. 14 20
872 109.50 radiation 30.0 90 > th dose independent rect. 14 23
876 109.51 radiation 1.0 30 > th dose independent rect. 9 4
892 109.53 radiation 40.0 90 < th dose dependent rect. 3 18
898 109.56 atmosphere 995.0 270 > th dose dependent rect. 7 4
900 109.56 humidity 50.0 90 > th dose dependent rect. 2 7
908 109.58 temperature 30.0 30 < th dose independent rect. 9 21
929 109.62 temperature 10.0 30 > th dose independent rect. 9 4
932 109.62 atmosphere 1015.0 30 < th dose independent rect. 9 4
933 109.62 precipitation 0.1 30 < th dose independent rect. 9 4
935 109.62 temperature 10.0 30 > th dose independent rect. 13 20
936 109.62 precipitation 0.1 30 < th dose dependent rect. 9 4
941 109.64 wind 1.0 10 > th dose independent rect. 9 15
945 109.64 wind 9.0 30 < th dose independent rect. 13 20
972 109.69 precipitation 0.1 30 < th dose independent rect. 13 20
973 109.69 temperature 15.0 10 > th dose independent rect. 11 23
975 109.69 precipitation 0.1 30 < th dose dependent rect. 13 20
976 109.70 humidity 90.0 90 < th dose independent rect. 9 2
983 109.70 radiation 30.0 10 < th dose independent rect. 11 10
988 109.71 atmosphere 1015.0 30 < th dose independent rect. 9 17