FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0495200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.39 (0.0241) R2 : 0.000406
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0218 (0.0506) R2dN8 : 0.000524 R2N8 : 0.000406
σ : 0.453
deviance : 94.17
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
86 0.436 3.41 0.0645 0.22 0.836 -0.254 2.37 0.0334 7.23 20.44 978 -- --
89.92 0.442 3.37 0.211 0.198 0.224 -0.177 -- 0.0846 7.12 28.27 840 -- --
86.16 0.432 3.41 0.0576 0.222 0.834 -- 2.34 0.0357 7.34 20.42 1006 -- --
89.9 0.442 3.37 0.203 0.213 0.217 -- -- 0.0703 7.53 35.16 997 -- --
88.62 0.438 3.41 0.0496 -- 0.761 -- 2.16 0.0422 -- 21.22 958 -- --
90.59 0.446 3.38 0.142 0.236 -- -0.0303 -- 0.0346 7.97 -- -- -- --
90.59 0.446 3.38 0.141 0.236 -- -- -- 0.0347 8.03 -- -- -- --
91.51 0.446 3.37 0.238 -- 0.358 -- -- 0.106 -- 30 675 -- --
90.86 0.444 3.38 -- 0.238 0.119 -- -- 0.0363 7.8 45.08 1337 -- --
93.63 0.452 3.39 0.143 -- -- -- -- 0.0377 -- -- -- -- --
91.12 0.447 3.38 -- 0.237 -- -- -- 0.019 7.98 -- -- -- --
92.85 0.449 3.38 -- -- 0.27 -- -- 0.0653 -- 30.3 667 -- --
94.17 0.453 3.39 -- -- -- -- -- 0.0218 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 81.58 wind 1.0 90 < th dose independent rect. 16 1
2 81.58 wind 1.0 90 < th dose dependent rect. 16 1
10 83.99 wind 1.0 30 < th dose dependent rect. 1 2
13 84.22 wind 1.0 30 < th dose independent rect. 24 3
19 84.43 wind 1.0 10 < th dose independent rect. 13 14
22 84.48 wind 1.0 30 < th dose dependent rect. 21 6
26 84.50 wind 1.0 10 < th dose independent rect. 17 10
29 84.51 wind 1.0 10 < th dose independent rect. 21 6
39 84.66 humidity 80.0 10 < th dose independent rect. 6 2
41 84.71 radiation 10.0 30 > th dose independent rect. 7 1
42 84.77 wind 1.0 30 < th dose dependent rect. 10 17
43 84.79 wind 1.0 30 < th dose dependent rect. 13 14
46 84.87 humidity 80.0 10 < th dose independent rect. 22 10
65 85.07 temperature 20.0 720 > th dose independent rect. 7 8
66 85.08 atmosphere 1005.0 10 > th dose dependent rect. 2 2
67 85.13 atmosphere 1005.0 90 > th dose dependent rect. 2 1
68 85.18 atmosphere 1000.0 10 > th dose independent rect. 3 23
74 85.24 wind 1.0 10 < th dose independent rect. 6 21
88 85.52 temperature 20.0 720 < th dose independent rect. 5 4
94 85.58 wind 9.0 4320 < th dose independent rect. 3 1
127 85.78 temperature 20.0 720 < th dose independent rect. 5 14
141 85.84 atmosphere 1010.0 10 < th dose dependent rect. 2 1
143 85.85 temperature 15.0 720 > th dose dependent rect. 3 2
146 85.87 temperature 20.0 720 < th dose independent sin 1 NA
148 85.88 temperature 25.0 90 > th dose independent rect. 1 1
150 85.88 precipitation 0.1 10 < th dose independent rect. 3 23
151 85.88 precipitation 0.1 10 < th dose dependent rect. 3 23
156 85.90 temperature 20.0 10 > th dose dependent rect. 2 1
160 85.92 humidity 90.0 10 > th dose independent rect. 2 1
167 85.95 temperature 20.0 10 > th dose independent rect. 2 1
168 85.95 atmosphere 1005.0 10 > th dose independent rect. 2 1
174 85.97 temperature 20.0 720 < th dose dependent rect. 7 1
176 85.97 radiation 1.0 4320 < th dose dependent rect. 3 1
178 85.97 temperature 20.0 720 < th dose dependent rect. 24 8
179 85.98 temperature 20.0 720 < th dose independent rect. 7 2
196 86.01 temperature 20.0 720 > th dose independent rect. 3 17
198 86.01 radiation 1.0 43200 < th dose dependent rect. 3 1
226 86.05 humidity 60.0 10 > th dose dependent rect. 2 1
231 86.05 temperature 20.0 720 < th dose dependent rect. 4 4
236 86.06 temperature 10.0 10 > th dose independent rect. 2 1
241 86.06 temperature 10.0 1440 > th dose independent rect. 3 1
244 86.06 temperature 30.0 10 < th dose independent rect. 2 1
246 86.06 temperature 30.0 1440 < th dose independent rect. 3 1
250 86.06 humidity 50.0 10 > th dose independent rect. 2 1
256 86.06 humidity 50.0 1440 > th dose independent rect. 3 1
268 86.06 atmosphere 995.0 1440 > th dose independent rect. 3 1
269 86.06 atmosphere 1010.0 10 < th dose independent rect. 2 1
273 86.06 radiation 1.0 10 < th dose independent rect. 2 1
283 86.06 radiation 1.0 1440 < th dose independent rect. 3 1
303 86.06 precipitation 0.1 10 < th dose independent rect. 2 1
308 86.06 temperature 10.0 10 > th dose independent rect. 3 23
310 86.06 temperature 10.0 1440 > th dose independent rect. 4 23
319 86.06 atmosphere 995.0 30 > th dose dependent rect. 2 1
320 86.06 radiation 1.0 10 < th dose dependent rect. 2 1
339 86.06 precipitation 0.1 10 < th dose dependent rect. 2 1
359 86.09 humidity 90.0 270 > th dose independent rect. 15 1
363 86.09 temperature 20.0 720 < th dose dependent rect. 24 1
364 86.09 humidity 90.0 270 > th dose dependent rect. 15 1
382 86.11 temperature 30.0 30 < th dose dependent rect. 2 1
391 86.13 temperature 20.0 720 > th dose independent sin 0 NA
398 86.14 precipitation 0.1 270 > th dose independent rect. 14 2
399 86.14 precipitation 0.1 270 > th dose dependent rect. 14 2
408 86.16 radiation 10.0 10 > th dose independent rect. 16 16
410 86.16 temperature 20.0 720 < th dose dependent sin 8 NA
451 86.22 radiation 30.0 270 > th dose independent rect. 9 1
456 86.22 temperature 20.0 720 < th dose dependent rect. 4 1
478 86.24 temperature 20.0 1440 < th dose dependent rect. 22 1
503 86.27 wind 1.0 30 > th dose independent rect. 2 1
504 86.27 temperature 25.0 1440 < th dose dependent rect. 12 1
523 86.29 radiation 30.0 90 > th dose independent rect. 8 4
627 86.38 temperature 20.0 1440 < th dose dependent rect. 19 4
628 86.38 temperature 20.0 1440 < th dose dependent rect. 19 6
635 86.39 temperature 20.0 1440 < th dose dependent rect. 19 1
647 86.40 humidity 90.0 1440 < th dose independent rect. 12 1
648 86.40 temperature 20.0 1440 > th dose independent rect. 9 4
686 86.43 wind 1.0 720 < th dose dependent rect. 6 2
710 86.45 wind 7.0 14400 < th dose independent rect. 4 6
789 86.49 temperature 20.0 1440 > th dose independent rect. 11 2
802 86.50 humidity 90.0 1440 > th dose independent rect. 12 1
804 86.50 temperature 20.0 1440 < th dose independent rect. 9 4
806 86.50 radiation 30.0 90 < th dose independent rect. 3 10
808 86.50 humidity 90.0 1440 > th dose dependent rect. 12 1
812 86.50 temperature 10.0 720 > th dose dependent rect. 21 9
816 86.51 temperature 20.0 1440 > th dose independent rect. 9 9
819 86.51 temperature 20.0 720 < th dose dependent no NA NA
833 86.52 wind 1.0 720 < th dose dependent rect. 6 4
840 86.52 temperature 20.0 720 < th dose dependent rect. 4 23
855 86.54 wind 9.0 4320 > th dose independent rect. 3 1
872 86.54 temperature 20.0 720 > th dose independent rect. 3 2
894 86.54 wind 9.0 4320 > th dose dependent rect. 3 1
939 86.55 wind 1.0 720 < th dose dependent rect. 14 9
954 86.57 temperature 20.0 1440 < th dose independent rect. 11 2
977 86.58 temperature 20.0 1440 > th dose independent rect. 17 1
987 86.59 radiation 30.0 90 < th dose independent rect. 3 12
995 86.60 temperature 20.0 1440 < th dose independent rect. 17 1