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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0492100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.43 (0.0345) R2 : 0.475
β1 : 1.64 (0.126) R2dD : 0.201 R2D : 0.0944
β2 : 1.22 (0.089) R2dC : 0.216 R2C : 0.156
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.801 (0.0737) R2dN8 : 0.182 R2N8 : 0.0672
σ : 0.649
deviance : 192.14
__
_____
C
peak time of C : 16.7
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
172.55 0.617 3.35 2.22 1.39 -0.702 1.04 2.77 1.03 16.3 18.6 16 -- --
178.86 0.628 3.41 1.75 1.4 -0.602 1.87 -- 0.893 16.2 20.68 25 -- --
174.85 0.616 3.34 2.34 1.38 -0.69 -- 3.52 1.06 16.3 18.6 16 -- --
188.28 0.639 3.41 1.75 1.4 -0.512 -- -- 0.889 16.3 20.77 16 -- --
249.35 0.735 3.37 2.04 -- 0.63 -- 4.17 0.834 -- 0.04636 32 -- --
184.42 0.637 3.43 1.63 1.2 -- 1.71 -- 0.792 16.5 -- -- -- --
192.14 0.649 3.43 1.64 1.22 -- -- -- 0.801 16.7 -- -- -- --
258.39 0.749 3.43 1.49 -- 0.735 -- -- 0.711 -- 25.1 10 -- --
262.37 0.754 3.48 -- 1.13 0.244 -- -- 0.59 16.8 7.269 50 -- --
270.98 0.769 3.42 1.59 -- -- -- -- 0.769 -- -- -- -- --
263 0.759 3.47 -- 1.19 -- -- -- 0.618 16.7 -- -- -- --
304.24 0.812 3.48 -- -- 1.08 -- -- 0.516 -- 24.4 268 -- --
337.93 0.858 3.46 -- -- -- -- -- 0.592 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 170.75 temperature 20.0 30 > th dose dependent rect. 15 23
2 170.96 humidity 80.0 43200 > th dose independent rect. 6 1
5 171.18 humidity 80.0 43200 < th dose independent rect. 6 2
6 171.29 temperature 10.0 90 > th dose dependent rect. 15 23
11 171.87 radiation 20.0 14400 < th dose independent rect. 2 6
13 171.87 radiation 20.0 14400 < th dose independent rect. 17 15
14 171.89 radiation 20.0 14400 < th dose independent rect. 5 3
17 171.89 radiation 20.0 14400 < th dose independent rect. 21 11
26 172.04 temperature 25.0 90 < th dose independent rect. 14 3
27 172.09 temperature 20.0 30 > th dose dependent rect. 6 23
29 172.15 temperature 20.0 30 > th dose dependent rect. 21 23
32 172.23 humidity 80.0 43200 > th dose dependent rect. 9 1
33 172.26 humidity 60.0 43200 > th dose independent rect. 9 3
34 172.29 humidity 80.0 43200 > th dose independent rect. 10 1
36 172.34 temperature 20.0 30 > th dose dependent rect. 11 23
53 172.47 humidity 80.0 43200 < th dose independent rect. 10 1
54 172.47 humidity 60.0 43200 < th dose independent rect. 9 4
55 172.50 humidity 60.0 43200 > th dose independent rect. 10 1
56 172.50 radiation 30.0 14400 < th dose dependent rect. 1 4
59 172.53 temperature 20.0 10 > th dose dependent rect. 2 23
63 172.55 humidity 60.0 43200 > th dose independent rect. 8 5
66 172.57 humidity 60.0 43200 < th dose independent rect. 14 22
67 172.60 humidity 60.0 43200 > th dose independent rect. 16 4
69 172.61 humidity 60.0 43200 < th dose independent sin 2 NA
72 172.61 humidity 60.0 43200 > th dose independent rect. 14 22
74 172.62 temperature 20.0 30 > th dose dependent rect. 18 23
77 172.64 precipitation 0.1 43200 < th dose independent rect. 23 1
80 172.64 precipitation 0.1 43200 < th dose dependent rect. 23 1
81 172.65 humidity 80.0 43200 < th dose dependent rect. 7 1
83 172.66 humidity 60.0 43200 < th dose independent rect. 7 14
134 172.72 humidity 60.0 43200 < th dose independent rect. 4 13
171 172.75 atmosphere 1010.0 14400 > th dose independent rect. 11 1
206 172.76 temperature 25.0 14400 < th dose dependent rect. 1 1
209 172.76 temperature 25.0 14400 < th dose dependent rect. 1 4
210 172.77 humidity 60.0 43200 < th dose independent rect. 16 4
225 172.78 humidity 60.0 43200 < th dose independent rect. 7 8
242 172.78 wind 3.0 30 > th dose dependent rect. 1 1
243 172.78 temperature 10.0 14400 > th dose dependent rect. 1 1
271 172.80 humidity 60.0 43200 < th dose independent no NA NA
273 172.80 radiation 10.0 14400 < th dose independent rect. 1 4
300 172.82 atmosphere 1010.0 14400 < th dose independent rect. 11 1
311 172.82 radiation 20.0 14400 > th dose dependent rect. 6 2
328 172.83 humidity 60.0 43200 > th dose independent sin 3 NA
350 172.84 precipitation 0.1 43200 > th dose independent rect. 23 1
361 172.84 precipitation 0.1 43200 > th dose dependent rect. 23 1
383 172.86 atmosphere 1015.0 43200 < th dose independent rect. 9 4
394 172.87 humidity 60.0 43200 > th dose independent rect. 7 15
408 172.88 atmosphere 1015.0 43200 > th dose independent rect. 9 4
415 172.88 humidity 60.0 43200 > th dose independent rect. 2 18
460 172.89 temperature 20.0 30 > th dose dependent rect. 4 23
523 172.93 radiation 1.0 43200 > th dose independent rect. 17 1
542 172.94 humidity 60.0 43200 > th dose independent no NA NA
569 172.95 radiation 1.0 43200 < th dose independent rect. 15 15
577 172.95 humidity 60.0 43200 > th dose independent rect. 19 23
580 172.96 radiation 1.0 43200 < th dose independent rect. 17 1
581 172.96 humidity 90.0 43200 < th dose independent rect. 19 2
597 172.96 temperature 20.0 30 > th dose dependent no NA NA
653 172.99 temperature 30.0 4320 < th dose dependent rect. 11 2
700 173.02 radiation 1.0 43200 > th dose independent rect. 15 15
725 173.03 temperature 30.0 4320 < th dose dependent rect. 9 5
729 173.04 atmosphere 1005.0 43200 > th dose independent rect. 14 1
730 173.04 wind 9.0 43200 < th dose independent rect. 1 2
748 173.04 temperature 20.0 30 > th dose dependent rect. 4 20
752 173.05 radiation 1.0 43200 < th dose independent rect. 15 3
756 173.05 radiation 1.0 43200 > th dose independent rect. 17 13
761 173.05 humidity 70.0 43200 < th dose dependent rect. 17 1
766 173.06 radiation 1.0 43200 < th dose independent sin 12 NA
778 173.06 radiation 1.0 43200 < th dose independent rect. 15 19
814 173.08 radiation 1.0 43200 > th dose independent rect. 15 19
839 173.09 atmosphere 1015.0 43200 < th dose independent rect. 9 1
862 173.10 radiation 1.0 43200 > th dose independent rect. 15 17
876 173.11 radiation 1.0 43200 > th dose independent sin 12 NA
901 173.11 temperature 20.0 30 > th dose dependent rect. 8 23
902 173.12 humidity 60.0 43200 > th dose independent sin 16 NA
919 173.12 temperature 25.0 90 < th dose independent rect. 21 22
941 173.13 humidity 80.0 43200 > th dose dependent rect. 18 1
948 173.13 temperature 30.0 4320 < th dose dependent rect. 7 9
956 173.14 wind 3.0 10 > th dose independent rect. 1 1