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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0491600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.97 (0.0437) R2 : 0.101
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 5.53 (0.811) R2dE : 0.0917 R2E : 0.0915
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.179 (0.092) R2dN8 : 0.00968 R2N8 : 0.00945
σ : 0.821
deviance : 310.61
__
_____
C
peak time of C : --
E
wheather : wind
threshold : 0.8092
memory length : 21
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 5.04
open length of G : 0.766

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
308.09 0.825 2.97 0.055 0.223 4.66 -0.208 -12.4 -0.161 16.9 0.8304 30 5.12 0.778
310.53 0.821 2.95 0.102 0.222 4.82 -0.0247 -- -0.139 16.7 0.6 30 5.08 0.75
308.16 0.818 2.97 0.0568 0.221 4.67 -- -12.1 -0.162 16.5 0.8236 29 5.12 0.778
307.85 0.817 2.96 0.127 0.258 5.35 -- -- -0.161 16.5 0.8249 21 5.05 0.782
310.51 0.821 2.97 0.0624 -- 4.59 -- -11.9 -0.171 -- 0.6 33 5.19 0.666
340.76 0.865 2.97 0.104 0.152 -- -0.0476 -- -0.188 16 -- -- -- --
340.76 0.864 2.97 0.104 0.151 -- -- -- -0.188 15.8 -- -- -- --
310.32 0.82 2.96 0.105 -- 5.55 -- -- -0.168 -- 0.8125 21 5.05 0.768
307.95 0.817 2.97 -- 0.227 5.65 -- -- -0.172 16.5 0.8262 21 5.03 0.781
342.02 0.864 2.97 0.0976 -- -- -- -- -0.192 -- -- -- -- --
341.04 0.864 2.97 -- 0.149 -- -- -- -0.199 15.8 -- -- -- --
310.61 0.821 2.97 -- -- 5.53 -- -- -0.179 -- 0.8092 21 5.04 0.766
342.27 0.864 2.97 -- -- -- -- -- -0.203 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 310.19 wind 1 30 < th dose dependent rect. 5 1
3 314.50 wind 1 30 < th dose independent rect. 5 1
5 314.86 wind 1 30 < th dose dependent rect. 5 4
21 319.32 wind 1 30 < th dose dependent rect. 5 13
34 320.83 radiation 1 10 < th dose independent rect. 11 3
42 320.83 radiation 1 10 < th dose dependent rect. 11 3
68 321.30 radiation 1 10 < th dose independent rect. 13 1
78 321.30 radiation 1 10 < th dose dependent rect. 13 1
88 321.31 temperature 20 30 < th dose dependent rect. 12 2
91 321.32 temperature 20 30 < th dose independent rect. 12 3
122 322.35 wind 3 90 < th dose independent rect. 12 1
123 322.40 wind 1 90 < th dose dependent rect. 24 1
136 322.84 humidity 50 90 > th dose independent sin 11 NA
142 323.14 humidity 50 90 < th dose dependent rect. 14 22
144 323.24 wind 5 90 < th dose dependent rect. 12 1
145 323.30 wind 3 90 < th dose dependent rect. 14 1
148 323.42 humidity 50 90 < th dose independent sin 11 NA
152 323.58 humidity 50 90 < th dose independent rect. 14 22
158 323.92 atmosphere 1015 10 < th dose dependent rect. 17 22
170 324.25 humidity 50 90 > th dose independent rect. 16 23
181 324.53 wind 1 30 < th dose independent rect. 5 13
188 324.64 humidity 50 30 < th dose dependent sin 11 NA
204 325.21 wind 1 90 < th dose independent rect. 14 1
214 325.44 humidity 50 90 > th dose independent rect. 5 9
230 325.78 wind 7 10 < th dose independent rect. 13 1
243 326.24 wind 1 90 < th dose independent rect. 24 1
244 326.26 temperature 20 1440 > th dose dependent rect. 15 1
253 326.49 atmosphere 1005 270 > th dose dependent rect. 23 5
256 326.56 temperature 25 1440 > th dose independent rect. 15 1
258 326.58 temperature 25 1440 < th dose independent rect. 15 2
263 326.73 humidity 90 4320 < th dose dependent rect. 18 1
264 326.76 humidity 90 4320 < th dose independent rect. 21 1
265 326.77 wind 1 4320 < th dose dependent rect. 10 3
266 326.79 temperature 25 90 > th dose independent rect. 14 2
270 326.81 humidity 90 1440 < th dose dependent rect. 19 20
271 326.82 temperature 10 1440 > th dose dependent rect. 15 1
280 326.89 atmosphere 1005 270 > th dose dependent rect. 1 2
301 327.12 humidity 90 4320 < th dose dependent rect. 16 6
310 327.15 wind 1 4320 < th dose independent rect. 10 3
322 327.24 humidity 70 4320 > th dose dependent rect. 18 1
328 327.28 humidity 50 4320 > th dose dependent rect. 18 1
330 327.31 humidity 90 1440 < th dose dependent rect. 8 18
349 327.41 radiation 10 90 > th dose independent rect. 14 2
358 327.44 humidity 50 4320 > th dose dependent rect. 16 6
368 327.47 humidity 80 1440 < th dose independent rect. 19 21
375 327.50 humidity 80 4320 > th dose dependent rect. 21 1
376 327.50 humidity 50 1440 > th dose dependent rect. 8 18
381 327.51 atmosphere 995 30 > th dose dependent rect. 14 23
387 327.54 temperature 30 1440 < th dose dependent rect. 14 2
405 327.58 humidity 80 1440 < th dose dependent sin 9 NA
450 327.70 radiation 40 4320 < th dose independent rect. 16 2
451 327.70 temperature 20 90 > th dose dependent rect. 14 2
469 327.75 humidity 80 1440 < th dose independent rect. 11 22
505 327.82 atmosphere 1015 30 < th dose dependent rect. 21 17
508 327.83 atmosphere 1015 10 < th dose dependent rect. 20 19
517 327.85 humidity 90 1440 < th dose dependent no NA NA
535 327.87 humidity 90 1440 < th dose dependent rect. 13 23
552 327.90 humidity 50 270 < th dose dependent rect. 11 4
584 327.93 humidity 50 270 > th dose independent sin 7 NA
591 327.94 humidity 70 1440 > th dose dependent rect. 9 16
596 327.95 humidity 80 1440 < th dose independent rect. 13 23
600 327.95 humidity 90 1440 < th dose dependent rect. 24 23
610 327.97 wind 1 4320 > th dose independent rect. 10 3
612 327.97 humidity 50 90 > th dose independent rect. 3 23
627 327.99 humidity 50 270 > th dose dependent rect. 17 21
641 328.02 radiation 1 10 > th dose independent rect. 15 1
671 328.07 humidity 50 270 < th dose dependent sin 7 NA
676 328.08 humidity 80 1440 > th dose independent rect. 10 23
677 328.08 humidity 80 1440 < th dose independent rect. 7 23
690 328.11 humidity 80 1440 < th dose independent rect. 3 23
705 328.13 humidity 50 270 < th dose independent rect. 9 6
729 328.14 humidity 80 1440 < th dose independent rect. 7 19
730 328.14 humidity 80 1440 > th dose independent rect. 19 22
742 328.15 humidity 90 1440 < th dose dependent sin 17 NA
751 328.16 humidity 80 1440 < th dose independent no NA NA
786 328.20 humidity 80 1440 < th dose independent rect. 13 20
790 328.20 radiation 1 43200 < th dose dependent rect. 20 5
795 328.21 radiation 40 4320 < th dose independent rect. 16 15
818 328.24 humidity 80 1440 < th dose independent rect. 15 23
832 328.25 humidity 80 1440 > th dose independent rect. 13 23
870 328.29 humidity 50 270 < th dose independent sin 8 NA
875 328.29 humidity 50 1440 > th dose dependent sin 18 NA
876 328.29 humidity 50 30 < th dose dependent sin 18 NA
935 328.35 humidity 70 1440 > th dose dependent sin 19 NA
948 328.36 humidity 80 1440 > th dose independent rect. 3 23
959 328.37 humidity 80 1440 > th dose independent rect. 7 19
989 328.40 humidity 50 270 < th dose independent rect. 12 1
991 328.40 humidity 50 270 < th dose dependent rect. 12 1