Os11g0488600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os11g0488600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33.72 | 0.273 | 11.1 | -0.869 | 0.373 | -0.549 | 0.912 | -0.0925 | -0.344 | 6.92 | 80.54 | 928 | -- | -- |
| 33.73 | 0.271 | 11.1 | -0.876 | 0.371 | -0.548 | 0.885 | -- | -0.345 | 6.89 | 80.54 | 929 | -- | -- |
| 35.57 | 0.278 | 11.1 | -0.872 | 0.369 | -0.533 | -- | 0.271 | -0.359 | 6.75 | 81 | 920 | -- | -- |
| 35.7 | 0.278 | 11.1 | -0.846 | 0.366 | -0.519 | -- | -- | -0.347 | 6.7 | 81.28 | 929 | -- | -- |
| 39.22 | 0.292 | 11.1 | -0.929 | -- | -0.67 | -- | 0.296 | -0.374 | -- | 81 | 1250 | -- | -- |
| 39.84 | 0.296 | 11.1 | -0.844 | 0.276 | -- | 0.646 | -- | -0.316 | 5.12 | -- | -- | -- | -- |
| 40.6 | 0.298 | 11.1 | -0.845 | 0.285 | -- | -- | -- | -0.32 | 4.2 | -- | -- | -- | -- |
| 38.56 | 0.289 | 11.1 | -0.883 | -- | -0.671 | -- | -- | -0.346 | -- | 77.48 | 1271 | -- | -- |
| 54.18 | 0.343 | 11.1 | -- | 0.33 | -0.504 | -- | -- | -0.289 | 6.73 | 84 | 958 | -- | -- |
| 45 | 0.313 | 11.1 | -0.834 | -- | -- | -- | -- | -0.312 | -- | -- | -- | -- | -- |
| 59.45 | 0.361 | 11.1 | -- | 0.269 | -- | -- | -- | -0.226 | 4.26 | -- | -- | -- | -- |
| 56.71 | 0.351 | 11.1 | -- | -- | -0.617 | -- | -- | -0.295 | -- | 87 | 1262 | -- | -- |
| 63.35 | 0.372 | 11.1 | -- | -- | -- | -- | -- | -0.22 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 32.95 | humidity | 80 | 720 | > th | dose independent | rect. | 14 | 17 |
| 3 | 33.04 | humidity | 80 | 720 | > th | dose independent | rect. | 12 | 19 |
| 14 | 33.20 | humidity | 90 | 720 | < th | dose dependent | rect. | 17 | 14 |
| 21 | 33.28 | humidity | 80 | 720 | < th | dose independent | rect. | 14 | 17 |
| 25 | 33.30 | humidity | 70 | 720 | > th | dose dependent | rect. | 14 | 16 |
| 32 | 33.34 | humidity | 80 | 720 | < th | dose independent | rect. | 14 | 15 |
| 34 | 33.35 | humidity | 80 | 720 | < th | dose independent | sin | 15 | NA |
| 41 | 33.37 | humidity | 80 | 720 | > th | dose independent | sin | 14 | NA |
| 51 | 33.40 | humidity | 90 | 720 | < th | dose dependent | rect. | 19 | 6 |
| 68 | 33.46 | humidity | 90 | 720 | < th | dose dependent | rect. | 20 | 3 |
| 75 | 33.48 | humidity | 70 | 720 | > th | dose dependent | sin | 14 | NA |
| 76 | 33.48 | humidity | 90 | 720 | < th | dose dependent | sin | 12 | NA |
| 104 | 33.58 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 6 |
| 105 | 33.58 | temperature | 25 | 720 | > th | dose independent | rect. | 14 | 8 |
| 117 | 33.61 | humidity | 90 | 720 | < th | dose dependent | rect. | 20 | 1 |
| 130 | 33.65 | radiation | 1 | 720 | > th | dose independent | sin | 17 | NA |
| 136 | 33.66 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 9 |
| 142 | 33.67 | radiation | 1 | 720 | > th | dose independent | rect. | 10 | 9 |
| 196 | 33.76 | radiation | 1 | 720 | > th | dose independent | rect. | 9 | 21 |
| 246 | 33.83 | temperature | 25 | 720 | > th | dose dependent | sin | 14 | NA |
| 252 | 33.84 | radiation | 1 | 720 | > th | dose independent | rect. | 16 | 14 |
| 374 | 34.02 | radiation | 20 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 382 | 34.03 | radiation | 20 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 420 | 34.08 | humidity | 60 | 720 | > th | dose dependent | rect. | 18 | 9 |
| 432 | 34.11 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 463 | 34.14 | temperature | 25 | 720 | > th | dose independent | sin | 18 | NA |
| 518 | 34.19 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 4 |
| 522 | 34.19 | radiation | 20 | 1440 | < th | dose dependent | rect. | 13 | 2 |
| 572 | 34.26 | humidity | 80 | 720 | < th | dose independent | rect. | 20 | 1 |
| 606 | 34.29 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 3 |
| 667 | 34.35 | radiation | 10 | 1440 | < th | dose dependent | rect. | 10 | 7 |
| 759 | 34.44 | temperature | 25 | 720 | < th | dose independent | rect. | 17 | 4 |
| 867 | 34.51 | humidity | 80 | 720 | > th | dose independent | rect. | 23 | 23 |
| 984 | 34.60 | radiation | 1 | 720 | > th | dose independent | rect. | 16 | 3 |