Os11g0486000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os11g0486000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 166.31 | 0.606 | 5.89 | 1.78 | 1.72 | 0.31 | 0.607 | -1.86 | 0.97 | 19.9 | 1011 | 6952 | -- | -- |
| 174.24 | 0.615 | 5.91 | 1.49 | 1.69 | 0.587 | 0.573 | -- | 0.968 | 19.8 | 1011 | 6774 | -- | -- |
| 167.37 | 0.603 | 5.89 | 1.76 | 1.73 | 0.311 | -- | -1.86 | 0.968 | 19.9 | 1012 | 6769 | -- | -- |
| 173.89 | 0.614 | 5.94 | 1.33 | 1.73 | 0.529 | -- | -- | 0.903 | 19.9 | 1011 | 7129 | -- | -- |
| 328.88 | 0.845 | 5.84 | 1.8 | -- | 0.343 | -- | -1.87 | 0.966 | -- | 1012 | 7125 | -- | -- |
| 182.46 | 0.633 | 5.98 | 1.13 | 1.73 | -- | 0.489 | -- | 0.757 | 19.9 | -- | -- | -- | -- |
| 183.16 | 0.634 | 5.97 | 1.12 | 1.73 | -- | -- | -- | 0.757 | 19.9 | -- | -- | -- | -- |
| 336.09 | 0.854 | 5.9 | 1.33 | -- | 0.576 | -- | -- | 0.882 | -- | 1011 | 7010 | -- | -- |
| 215.42 | 0.684 | 5.98 | -- | 1.74 | 0.226 | -- | -- | 0.763 | 19.9 | 1011 | 16843 | -- | -- |
| 346.82 | 0.87 | 5.93 | 1.1 | -- | -- | -- | -- | 0.734 | -- | -- | -- | -- | -- |
| 216.09 | 0.688 | 6 | -- | 1.73 | -- | -- | -- | 0.633 | 20 | -- | -- | -- | -- |
| 362.63 | 0.887 | 5.99 | -- | -- | -0.633 | -- | -- | 0.46 | -- | 1016 | 47520 | -- | -- |
| 378.69 | 0.908 | 5.96 | -- | -- | -- | -- | -- | 0.612 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 163.95 | humidity | 50 | 43200 | < th | dose dependent | rect. | 17 | 15 |
| 6 | 164.42 | temperature | 20 | 90 | > th | dose dependent | rect. | 16 | 16 |
| 7 | 164.52 | humidity | 50 | 43200 | < th | dose dependent | rect. | 17 | 3 |
| 17 | 164.69 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 15 |
| 21 | 164.97 | temperature | 20 | 10 | > th | dose dependent | sin | 10 | NA |
| 23 | 165.10 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 4 | 1 |
| 25 | 165.19 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 3 | 3 |
| 27 | 165.25 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 4 | 2 |
| 29 | 165.30 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 30 | 165.36 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 10 | 2 |
| 33 | 165.42 | wind | 1 | 10 | > th | dose independent | rect. | 12 | 17 |
| 35 | 165.45 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 2 | 10 |
| 40 | 165.49 | radiation | 20 | 4320 | < th | dose independent | rect. | 17 | 7 |
| 41 | 165.51 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 21 | 15 |
| 61 | 165.64 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 21 | 9 |
| 80 | 165.72 | humidity | 90 | 14400 | < th | dose independent | rect. | 24 | 4 |
| 82 | 165.72 | humidity | 50 | 43200 | < th | dose independent | rect. | 18 | 13 |
| 97 | 165.77 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 101 | 165.77 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 10 |
| 102 | 165.78 | humidity | 90 | 14400 | < th | dose independent | rect. | 1 | 2 |
| 114 | 165.81 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 2 | 10 |
| 133 | 165.87 | atmosphere | 1005 | 43200 | < th | dose independent | sin | 8 | NA |
| 134 | 165.88 | humidity | 50 | 43200 | > th | dose independent | rect. | 18 | 2 |
| 168 | 165.99 | humidity | 50 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 169 | 165.99 | radiation | 20 | 4320 | < th | dose independent | rect. | 17 | 3 |
| 182 | 166.02 | radiation | 20 | 14400 | < th | dose independent | rect. | 17 | 10 |
| 190 | 166.04 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 22 | 14 |
| 203 | 166.07 | atmosphere | 1000 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 220 | 166.10 | humidity | 50 | 43200 | > th | dose independent | rect. | 17 | 16 |
| 248 | 166.16 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 22 | 8 |
| 340 | 166.33 | wind | 1 | 30 | > th | dose independent | rect. | 7 | 23 |
| 347 | 166.35 | atmosphere | 1005 | 43200 | > th | dose independent | sin | 8 | NA |
| 349 | 166.35 | atmosphere | 1010 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 356 | 166.37 | humidity | 50 | 43200 | > th | dose independent | rect. | 18 | 14 |
| 361 | 166.38 | humidity | 50 | 43200 | < th | dose independent | rect. | 17 | 16 |
| 391 | 166.46 | atmosphere | 1000 | 14400 | > th | dose dependent | rect. | 4 | 1 |
| 431 | 166.59 | wind | 1 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 461 | 166.64 | radiation | 10 | 14400 | > th | dose dependent | rect. | 17 | 14 |
| 478 | 166.69 | atmosphere | 1015 | 14400 | < th | dose dependent | rect. | 7 | 1 |
| 508 | 166.77 | temperature | 25 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 540 | 166.82 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 555 | 166.85 | radiation | 10 | 270 | < th | dose independent | rect. | 4 | 14 |
| 556 | 166.85 | temperature | 25 | 270 | > th | dose independent | rect. | 15 | 17 |
| 572 | 166.88 | temperature | 25 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 602 | 166.94 | temperature | 20 | 720 | > th | dose dependent | rect. | 22 | 1 |
| 607 | 166.95 | temperature | 25 | 1440 | > th | dose independent | rect. | 16 | 10 |
| 619 | 166.96 | atmosphere | 1010 | 43200 | < th | dose dependent | rect. | 21 | 11 |
| 644 | 166.99 | temperature | 25 | 1440 | < th | dose independent | rect. | 17 | 8 |
| 649 | 166.99 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 2 |
| 671 | 167.01 | atmosphere | 1015 | 14400 | < th | dose dependent | rect. | 4 | 6 |
| 699 | 167.05 | humidity | 50 | 43200 | > th | dose independent | rect. | 3 | 6 |
| 730 | 167.07 | atmosphere | 1015 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 744 | 167.09 | atmosphere | 1010 | 43200 | < th | dose dependent | sin | 9 | NA |
| 752 | 167.10 | atmosphere | 1010 | 4320 | > th | dose independent | rect. | 4 | 1 |
| 770 | 167.12 | humidity | 50 | 43200 | > th | dose independent | rect. | 1 | 8 |
| 779 | 167.13 | atmosphere | 1010 | 4320 | < th | dose independent | rect. | 4 | 1 |
| 900 | 167.26 | radiation | 40 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 927 | 167.28 | radiation | 40 | 14400 | < th | dose independent | rect. | 15 | 10 |
| 928 | 167.28 | radiation | 40 | 14400 | < th | dose independent | rect. | 15 | 12 |
| 952 | 167.30 | radiation | 40 | 14400 | < th | dose independent | rect. | 15 | 14 |