Os11g0485900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to NBS-LRR type resistance protein (Fragment).
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Os11g0485900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to NBS-LRR type resistance protein (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 104.43 | 0.48 | 3.33 | 0.321 | 0.699 | -0.388 | 0.939 | -2.35 | 0.534 | 20.8 | 68 | 6869 | -- | -- |
| 110.43 | 0.489 | 3.34 | 0.427 | 0.758 | -0.576 | 0.873 | -- | 0.605 | 20.7 | 73 | 5281 | -- | -- |
| 107.26 | 0.482 | 3.33 | 0.286 | 0.689 | -0.362 | -- | -2.25 | 0.531 | 20.8 | 68.68 | 7007 | -- | -- |
| 112.51 | 0.494 | 3.34 | 0.425 | 0.748 | -0.56 | -- | -- | 0.609 | 20.7 | 73 | 5279 | -- | -- |
| 133.89 | 0.539 | 3.31 | 0.234 | -- | -0.328 | -- | -2.1 | 0.523 | -- | 69 | 7140 | -- | -- |
| 115.27 | 0.503 | 3.35 | 0.449 | 0.684 | -- | 0.811 | -- | 0.509 | 20.6 | -- | -- | -- | -- |
| 117.4 | 0.507 | 3.35 | 0.422 | 0.681 | -- | -- | -- | 0.509 | 20.6 | -- | -- | -- | -- |
| 139.76 | 0.551 | 3.31 | 0.337 | -- | -0.411 | -- | -- | 0.573 | -- | 72.98 | 8643 | -- | -- |
| 116.85 | 0.503 | 3.33 | -- | 0.753 | -0.609 | -- | -- | 0.644 | 20.8 | 73.12 | 5276 | -- | -- |
| 143.52 | 0.56 | 3.33 | 0.42 | -- | -- | -- | -- | 0.503 | -- | -- | -- | -- | -- |
| 122.1 | 0.517 | 3.36 | -- | 0.68 | -- | -- | -- | 0.462 | 20.7 | -- | -- | -- | -- |
| 142.9 | 0.557 | 3.3 | -- | -- | -0.513 | -- | -- | 0.603 | -- | 73 | 8691 | -- | -- |
| 148.18 | 0.568 | 3.34 | -- | -- | -- | -- | -- | 0.457 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 104.63 | humidity | 70 | 4320 | < th | dose independent | rect. | 15 | 1 |
| 2 | 104.68 | humidity | 60 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 3 | 104.95 | humidity | 70 | 14400 | < th | dose independent | rect. | 18 | 18 |
| 5 | 105.00 | humidity | 70 | 14400 | > th | dose independent | rect. | 19 | 17 |
| 6 | 105.00 | humidity | 70 | 14400 | < th | dose dependent | rect. | 12 | 1 |
| 7 | 105.01 | humidity | 60 | 14400 | < th | dose independent | rect. | 11 | 3 |
| 11 | 105.04 | humidity | 70 | 14400 | < th | dose independent | rect. | 18 | 15 |
| 15 | 105.14 | humidity | 70 | 4320 | > th | dose independent | rect. | 15 | 1 |
| 16 | 105.15 | humidity | 70 | 14400 | < th | dose independent | sin | 9 | NA |
| 20 | 105.18 | humidity | 60 | 14400 | > th | dose independent | rect. | 11 | 2 |
| 25 | 105.22 | humidity | 70 | 14400 | > th | dose independent | sin | 9 | NA |
| 26 | 105.24 | humidity | 80 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 28 | 105.25 | humidity | 70 | 14400 | > th | dose independent | rect. | 7 | 5 |
| 40 | 105.27 | humidity | 70 | 14400 | < th | dose independent | rect. | 7 | 5 |
| 53 | 105.28 | humidity | 70 | 14400 | < th | dose dependent | rect. | 11 | 10 |
| 69 | 105.29 | humidity | 70 | 14400 | < th | dose dependent | rect. | 16 | 22 |
| 122 | 105.36 | humidity | 70 | 14400 | < th | dose dependent | sin | 20 | NA |
| 170 | 105.39 | humidity | 70 | 14400 | < th | dose dependent | no | NA | NA |
| 262 | 105.47 | humidity | 60 | 14400 | < th | dose independent | rect. | 11 | 9 |
| 285 | 105.50 | humidity | 80 | 4320 | < th | dose independent | rect. | 9 | 1 |
| 294 | 105.52 | humidity | 80 | 14400 | > th | dose independent | rect. | 8 | 7 |
| 343 | 105.57 | humidity | 60 | 14400 | > th | dose independent | rect. | 11 | 22 |
| 370 | 105.58 | humidity | 60 | 14400 | > th | dose independent | rect. | 11 | 9 |
| 374 | 105.58 | humidity | 60 | 14400 | > th | dose independent | rect. | 11 | 14 |
| 377 | 105.58 | humidity | 60 | 14400 | > th | dose independent | rect. | 11 | 18 |
| 490 | 105.66 | humidity | 80 | 14400 | < th | dose independent | rect. | 10 | 5 |
| 523 | 105.67 | humidity | 60 | 14400 | > th | dose independent | rect. | 15 | 23 |
| 572 | 105.71 | humidity | 60 | 14400 | < th | dose independent | sin | 19 | NA |
| 616 | 105.73 | humidity | 60 | 14400 | > th | dose independent | sin | 20 | NA |
| 734 | 105.77 | humidity | 60 | 14400 | > th | dose independent | rect. | 4 | 16 |
| 750 | 105.77 | humidity | 60 | 14400 | > th | dose independent | rect. | 24 | 20 |
| 768 | 105.78 | humidity | 60 | 14400 | > th | dose independent | no | NA | NA |
| 857 | 105.79 | humidity | 70 | 4320 | < th | dose independent | rect. | 14 | 17 |
| 870 | 105.80 | humidity | 60 | 14400 | < th | dose independent | no | NA | NA |
| 953 | 105.80 | humidity | 70 | 14400 | < th | dose dependent | sin | 11 | NA |
| 962 | 105.81 | humidity | 70 | 4320 | < th | dose independent | rect. | 14 | 7 |