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Os11g0485200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.41 (0.0249) R2 : 0.797
β1 : 2.73 (0.0913) R2dD : 0.412 R2D : 0.323
β2 : 1.94 (0.065) R2dC : 0.397 R2C : 0.354
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.686 (0.0532) R2dN8 : 0.0991 R2N8 : -0.000896
σ : 0.469
deviance : 100.22
__
_____
C
peak time of C : 18.4
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
92.46 0.452 8.44 2.44 1.77 0.814 0.259 -2.03 0.617 18.8 26.1 74 -- --
93.25 0.453 8.41 2.64 1.81 0.676 0.181 -- 0.66 18.8 26.1 74 -- --
92.55 0.448 8.43 2.46 1.79 0.835 -- -1.97 0.632 18.8 26.45 61 -- --
93.29 0.453 8.41 2.64 1.82 0.69 -- -- 0.668 18.8 26.45 61 -- --
195.68 0.652 8.44 2 -- 1.97 -- -2.59 0.418 -- 24.61 336 -- --
99.93 0.469 8.41 2.73 1.94 -- 0.344 -- 0.685 18.4 -- -- -- --
100.22 0.469 8.41 2.73 1.94 -- -- -- 0.686 18.4 -- -- -- --
200.69 0.66 8.41 2.4 -- 1.82 -- -- 0.493 -- 24.7 363 -- --
268.47 0.763 8.48 -- 1.58 1.3 -- -- 0.321 19.4 24.99 73 -- --
295.39 0.803 8.37 2.68 -- -- -- -- 0.645 -- -- -- -- --
296.63 0.806 8.47 -- 1.9 -- -- -- 0.382 18.5 -- -- -- --
346.87 0.867 8.47 -- -- 2.15 -- -- 0.185 -- 24.39 378 -- --
484.84 1.03 8.44 -- -- -- -- -- 0.348 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 84.40 temperature 30.0 270 < th dose dependent rect. 21 6
2 84.93 temperature 30.0 10 < th dose dependent rect. 22 8
7 86.13 atmosphere 1005.0 270 > th dose independent rect. 3 4
9 86.28 temperature 10.0 270 > th dose dependent rect. 7 8
22 87.16 humidity 70.0 90 > th dose independent rect. 4 18
23 87.17 wind 7.0 270 < th dose independent rect. 7 10
26 87.35 humidity 70.0 270 > th dose independent rect. 2 9
29 87.42 temperature 30.0 270 < th dose dependent rect. 23 2
32 87.51 temperature 30.0 90 < th dose independent rect. 4 18
33 87.54 wind 7.0 270 < th dose independent rect. 9 17
34 87.57 wind 7.0 270 < th dose independent rect. 7 20
38 87.71 radiation 30.0 270 < th dose dependent rect. 15 17
45 87.80 wind 1.0 43200 > th dose independent sin 13 NA
50 87.88 wind 1.0 43200 < th dose independent sin 13 NA
54 87.92 temperature 20.0 30 > th dose independent rect. 17 16
57 87.96 wind 1.0 43200 < th dose independent rect. 22 5
58 87.97 radiation 20.0 270 < th dose independent rect. 15 16
59 88.00 atmosphere 1005.0 10 > th dose independent rect. 5 4
67 88.06 humidity 70.0 270 > th dose independent rect. 2 18
69 88.08 temperature 15.0 270 > th dose dependent rect. 3 4
70 88.08 radiation 30.0 270 < th dose dependent rect. 3 6
71 88.09 humidity 60.0 270 > th dose dependent rect. 2 18
72 88.09 humidity 60.0 90 > th dose dependent rect. 4 18
73 88.10 temperature 20.0 90 > th dose independent rect. 4 5
80 88.19 radiation 40.0 270 < th dose dependent rect. 2 8
90 88.26 temperature 20.0 30 > th dose independent rect. 15 18
114 88.40 temperature 10.0 270 > th dose dependent rect. 17 14
115 88.40 radiation 1.0 90 < th dose dependent rect. 22 18
128 88.47 temperature 20.0 30 > th dose independent rect. 19 14
131 88.49 radiation 20.0 270 < th dose independent rect. 2 7
135 88.52 temperature 30.0 270 < th dose independent rect. 2 18
137 88.52 humidity 60.0 270 > th dose dependent rect. 2 9
146 88.55 radiation 20.0 270 < th dose dependent rect. 3 17
159 88.64 radiation 40.0 270 < th dose dependent rect. 3 17
160 88.65 humidity 50.0 270 > th dose independent rect. 16 15
183 88.77 radiation 10.0 270 < th dose independent rect. 3 17
186 88.77 humidity 50.0 10 > th dose dependent rect. 5 17
188 88.78 temperature 15.0 270 > th dose dependent rect. 4 2
197 88.83 radiation 1.0 10 < th dose dependent rect. 22 19
217 88.90 humidity 50.0 270 > th dose independent rect. 3 17
228 88.92 radiation 40.0 270 < th dose dependent rect. 2 19
248 89.00 radiation 10.0 10 < th dose dependent rect. 22 8
254 89.02 radiation 1.0 90 < th dose dependent rect. 22 9
257 89.03 wind 1.0 43200 > th dose independent rect. 22 5
268 89.06 temperature 15.0 30 > th dose dependent rect. 19 14
275 89.09 atmosphere 1000.0 270 > th dose independent rect. 21 6
299 89.16 wind 7.0 270 < th dose independent rect. 20 7
303 89.17 radiation 10.0 270 < th dose independent rect. 2 19
327 89.22 radiation 1.0 90 < th dose independent rect. 22 8
330 89.23 radiation 1.0 90 < th dose independent rect. 22 18
336 89.25 wind 9.0 4320 < th dose independent rect. 23 6
339 89.26 precipitation 0.1 270 < th dose independent rect. 7 10
343 89.26 radiation 40.0 270 < th dose independent rect. 2 19
346 89.26 precipitation 0.1 270 < th dose dependent rect. 7 10
351 89.29 radiation 1.0 90 < th dose dependent rect. 22 12
357 89.30 temperature 15.0 270 > th dose independent rect. 3 17
377 89.35 temperature 10.0 270 > th dose independent rect. 20 7
378 89.35 temperature 30.0 270 < th dose independent rect. 20 7
379 89.35 humidity 50.0 270 > th dose independent rect. 20 7
383 89.35 radiation 1.0 270 < th dose independent rect. 20 7
388 89.35 temperature 20.0 270 > th dose independent rect. 15 16
391 89.35 atmosphere 1015.0 270 < th dose independent rect. 3 17
392 89.35 radiation 10.0 270 < th dose dependent rect. 20 7
403 89.37 radiation 40.0 270 < th dose independent rect. 3 17
454 89.48 humidity 50.0 270 > th dose dependent rect. 21 5
462 89.50 precipitation 0.1 270 < th dose independent rect. 20 7
466 89.50 precipitation 0.1 270 < th dose dependent rect. 20 7
468 89.50 radiation 1.0 10 < th dose dependent rect. 22 16
473 89.51 temperature 30.0 90 < th dose independent rect. 17 16
487 89.55 temperature 20.0 10 > th dose independent rect. 5 17
494 89.56 temperature 20.0 270 > th dose dependent rect. 9 2
502 89.58 precipitation 0.1 270 < th dose independent rect. 7 20
503 89.58 precipitation 0.1 270 < th dose dependent rect. 7 20
534 89.65 atmosphere 1000.0 270 > th dose dependent rect. 3 4
555 89.69 humidity 70.0 90 > th dose independent rect. 4 11
573 89.72 precipitation 0.1 270 < th dose independent rect. 8 18
575 89.72 humidity 50.0 270 > th dose dependent rect. 20 7
580 89.72 precipitation 0.1 270 < th dose dependent rect. 8 18
585 89.74 temperature 25.0 30 < th dose independent rect. 23 5
605 89.77 temperature 10.0 270 > th dose independent rect. 7 10
606 89.77 atmosphere 1015.0 270 < th dose independent rect. 7 10
607 89.77 temperature 10.0 270 > th dose independent rect. 17 14
608 89.77 radiation 40.0 270 < th dose independent rect. 17 14
617 89.78 atmosphere 1000.0 30 > th dose independent rect. 22 8
634 89.81 wind 7.0 270 < th dose independent rect. 22 15
659 89.83 temperature 25.0 270 > th dose independent rect. 8 5
663 89.84 radiation 40.0 270 < th dose independent rect. 12 10
725 89.95 temperature 25.0 270 < th dose independent rect. 23 2
795 90.04 wind 9.0 4320 < th dose independent rect. 23 8
796 90.04 radiation 1.0 90 < th dose independent rect. 22 12
808 90.05 temperature 30.0 270 < th dose independent rect. 2 7
810 90.05 wind 1.0 43200 < th dose independent rect. 16 13
847 90.10 temperature 25.0 90 > th dose dependent sin 1 NA
854 90.11 atmosphere 1005.0 270 > th dose dependent rect. 4 2
861 90.12 wind 1.0 43200 > th dose independent rect. 17 12
864 90.12 temperature 25.0 270 > th dose dependent sin 5 NA
867 90.13 wind 5.0 270 < th dose independent rect. 3 4
868 90.13 humidity 70.0 90 > th dose independent rect. 4 13
931 90.21 temperature 10.0 270 > th dose independent rect. 3 4
933 90.21 temperature 30.0 270 < th dose independent rect. 3 4
934 90.21 humidity 50.0 270 > th dose independent rect. 3 4
936 90.21 atmosphere 995.0 270 > th dose independent rect. 3 4
937 90.21 atmosphere 1015.0 270 < th dose independent rect. 3 4
941 90.21 temperature 10.0 270 > th dose independent rect. 7 20
943 90.21 temperature 20.0 10 > th dose dependent rect. 2 7
946 90.22 precipitation 0.1 270 < th dose independent rect. 3 4
950 90.22 wind 7.0 270 < th dose independent rect. 21 17
951 90.22 precipitation 0.1 270 < th dose dependent rect. 3 4
963 90.24 wind 7.0 270 < th dose independent rect. 2 6
971 90.25 wind 9.0 270 < th dose independent rect. 17 14