Os11g0482400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Tetratricopeptide-like helical domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os11g0482400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Tetratricopeptide-like helical domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 114.95 | 0.504 | 8.67 | 0.457 | 0.367 | -0.388 | 0.89 | 9.03 | -0.842 | 15.8 | 30 | 1433 | -- | -- |
| 122.82 | 0.516 | 8.89 | -1.41 | 0.306 | 0.736 | 0.616 | -- | -0.926 | 15.4 | 32.08 | 4786 | -- | -- |
| 115.19 | 0.5 | 8.7 | 0.115 | 0.297 | -0.234 | -- | 10.1 | -0.839 | 14.4 | 30.08 | 1916 | -- | -- |
| 123.8 | 0.518 | 8.89 | -1.41 | 0.313 | 0.746 | -- | -- | -0.934 | 14.5 | 32.1 | 4786 | -- | -- |
| 119.79 | 0.51 | 8.7 | 0.15 | -- | -0.252 | -- | 10.3 | -0.853 | -- | 29.9 | 2061 | -- | -- |
| 144.17 | 0.563 | 8.92 | -1.21 | 0.284 | -- | 0.685 | -- | -1.06 | 15.9 | -- | -- | -- | -- |
| 145.35 | 0.565 | 8.92 | -1.2 | 0.289 | -- | -- | -- | -1.06 | 15.2 | -- | -- | -- | -- |
| 129.49 | 0.53 | 8.89 | -1.4 | -- | 0.737 | -- | -- | -0.934 | -- | 32.07 | 4786 | -- | -- |
| 173.13 | 0.613 | 8.86 | -- | 0.303 | 0.568 | -- | -- | -0.805 | 13.7 | 32 | 4787 | -- | -- |
| 150.09 | 0.572 | 8.92 | -1.21 | -- | -- | -- | -- | -1.06 | -- | -- | -- | -- | -- |
| 183.44 | 0.634 | 8.89 | -- | 0.313 | -- | -- | -- | -0.923 | 15.2 | -- | -- | -- | -- |
| 177.97 | 0.621 | 8.88 | -- | -- | 0.49 | -- | -- | -0.902 | -- | 32.09 | 6155 | -- | -- |
| 189 | 0.642 | 8.89 | -- | -- | -- | -- | -- | -0.929 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 112.55 | wind | 1.0 | 14400 | < th | dose independent | rect. | 2 | 4 |
| 2 | 112.89 | wind | 1.0 | 14400 | > th | dose independent | rect. | 2 | 4 |
| 3 | 113.43 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 9 | 6 |
| 19 | 113.77 | temperature | 30.0 | 1440 | > th | dose independent | sin | 5 | NA |
| 21 | 113.83 | temperature | 30.0 | 1440 | < th | dose independent | sin | 6 | NA |
| 24 | 113.90 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 9 | 5 |
| 30 | 113.98 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 6 | 8 |
| 37 | 114.03 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 16 | 4 |
| 49 | 114.12 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 20 | 18 |
| 53 | 114.13 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 22 | 16 |
| 83 | 114.26 | wind | 1.0 | 14400 | < th | dose independent | rect. | 4 | 2 |
| 139 | 114.61 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 228 | 114.97 | temperature | 30.0 | 1440 | > th | dose independent | no | NA | NA |
| 326 | 114.99 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 15 | 23 |
| 339 | 115.28 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 9 | 12 |
| 340 | 115.28 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 9 | 14 |
| 350 | 115.33 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 9 | 23 |
| 351 | 115.34 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 6 | 15 |
| 404 | 115.38 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 12 | 23 |
| 414 | 115.40 | wind | 1.0 | 14400 | > th | dose independent | rect. | 4 | 2 |
| 420 | 115.40 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 22 | 23 |
| 421 | 115.41 | temperature | 30.0 | 1440 | < th | dose independent | no | NA | NA |
| 469 | 115.45 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 496 | 115.60 | humidity | 60.0 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 513 | 115.67 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 10 | 1 |
| 537 | 115.74 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 2 | 3 |
| 564 | 115.85 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 13 | 23 |
| 594 | 116.00 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 16 | 2 |
| 599 | 116.00 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 16 | 2 |
| 621 | 116.05 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 16 | 2 |
| 652 | 116.10 | wind | 1.0 | 14400 | > th | dose independent | rect. | 2 | 1 |
| 653 | 116.10 | wind | 1.0 | 14400 | < th | dose independent | rect. | 2 | 1 |
| 670 | 116.12 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 690 | 116.13 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 705 | 116.14 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 6 | 16 |
| 710 | 116.14 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 6 | 16 |
| 713 | 116.15 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 6 | 16 |
| 742 | 116.20 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 13 | 5 |
| 745 | 116.21 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 13 | 8 |
| 784 | 116.29 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 928 | 116.42 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 929 | 116.42 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 940 | 116.46 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 16 | 2 |
| 949 | 116.49 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 6 | 12 |
| 950 | 116.49 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 6 | 12 |
| 951 | 116.49 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 6 | 12 |
| 953 | 116.50 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 12 | 1 |