Os11g0481400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os11g0481400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 149.02 | 0.574 | 10.1 | 0.0107 | 1.33 | 3.58 | -0.139 | -6.3 | -0.797 | 19.4 | 49.84 | 376 | -- | -- |
| 155.82 | 0.581 | 10 | 0.246 | 1.37 | 2.28 | -0.204 | -- | -0.78 | 19.3 | 49.96 | 395 | -- | -- |
| 149.07 | 0.569 | 10.1 | 0.0171 | 1.33 | 3.55 | -- | -6.3 | -0.798 | 19.4 | 49.78 | 377 | -- | -- |
| 155.33 | 0.58 | 10 | 0.168 | 1.38 | 2.09 | -- | -- | -0.811 | 19.4 | 49.47 | 390 | -- | -- |
| 233.12 | 0.711 | 10 | -0.0766 | -- | 4.64 | -- | -7.33 | -0.725 | -- | 50.02 | 387 | -- | -- |
| 179.88 | 0.629 | 10.1 | 0.366 | 1.62 | -- | 0.55 | -- | -0.87 | 19.2 | -- | -- | -- | -- |
| 180.69 | 0.629 | 10.1 | 0.354 | 1.62 | -- | -- | -- | -0.869 | 19.2 | -- | -- | -- | -- |
| 201.76 | 0.662 | 10 | 0.244 | -- | 1.66 | -- | -- | -0.928 | -- | 75.99 | 623 | -- | -- |
| 156.02 | 0.582 | 10 | -- | 1.37 | 2.16 | -- | -- | -0.827 | 19.5 | 49.22 | 388 | -- | -- |
| 320.33 | 0.836 | 10 | 0.325 | -- | -- | -- | -- | -0.897 | -- | -- | -- | -- | -- |
| 184 | 0.635 | 10.1 | -- | 1.62 | -- | -- | -- | -0.909 | 19.3 | -- | -- | -- | -- |
| 202.55 | 0.663 | 10 | -- | -- | 1.65 | -- | -- | -0.969 | -- | 75.82 | 628 | -- | -- |
| 323.12 | 0.839 | 10 | -- | -- | -- | -- | -- | -0.933 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 144.35 | humidity | 50 | 270 | > th | dose independent | rect. | 11 | 13 |
| 2 | 144.79 | humidity | 50 | 720 | < th | dose independent | sin | 11 | NA |
| 3 | 144.88 | humidity | 50 | 720 | < th | dose independent | rect. | 15 | 3 |
| 20 | 145.16 | humidity | 50 | 720 | > th | dose independent | rect. | 15 | 8 |
| 24 | 146.24 | humidity | 50 | 720 | > th | dose independent | sin | 11 | NA |
| 25 | 146.81 | humidity | 50 | 720 | < th | dose independent | rect. | 17 | 1 |
| 58 | 146.88 | humidity | 50 | 720 | < th | dose dependent | rect. | 17 | 1 |
| 100 | 147.98 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 16 | 15 |
| 123 | 148.52 | humidity | 50 | 270 | > th | dose independent | rect. | 4 | 23 |
| 142 | 148.77 | humidity | 60 | 720 | > th | dose independent | rect. | 17 | 7 |
| 143 | 148.79 | humidity | 60 | 720 | > th | dose independent | rect. | 17 | 16 |
| 150 | 149.28 | humidity | 80 | 270 | < th | dose dependent | rect. | 16 | 1 |
| 153 | 149.43 | humidity | 90 | 10 | < th | dose dependent | rect. | 16 | 6 |
| 154 | 149.47 | humidity | 50 | 720 | > th | dose independent | rect. | 15 | 17 |
| 200 | 149.73 | humidity | 50 | 270 | < th | dose dependent | sin | 12 | NA |
| 219 | 149.84 | humidity | 50 | 1440 | > th | dose independent | rect. | 15 | 2 |
| 222 | 149.86 | humidity | 50 | 1440 | > th | dose independent | rect. | 15 | 13 |
| 224 | 149.87 | humidity | 50 | 1440 | > th | dose independent | rect. | 15 | 15 |
| 320 | 150.12 | humidity | 80 | 270 | < th | dose dependent | rect. | 15 | 16 |
| 340 | 150.16 | humidity | 80 | 270 | < th | dose dependent | rect. | 15 | 4 |
| 361 | 150.19 | temperature | 30 | 720 | > th | dose dependent | rect. | 17 | 17 |
| 368 | 150.27 | temperature | 25 | 30 | > th | dose dependent | rect. | 16 | 6 |
| 376 | 150.34 | temperature | 30 | 720 | > th | dose dependent | rect. | 17 | 2 |
| 413 | 150.40 | wind | 3 | 1440 | < th | dose dependent | rect. | 8 | 5 |
| 440 | 150.79 | humidity | 90 | 10 | < th | dose dependent | rect. | 16 | 15 |
| 512 | 151.06 | humidity | 90 | 10 | < th | dose dependent | rect. | 16 | 12 |
| 535 | 151.11 | humidity | 50 | 270 | < th | dose independent | no | NA | NA |
| 656 | 151.12 | humidity | 50 | 270 | < th | dose dependent | no | NA | NA |
| 816 | 151.19 | wind | 3 | 4320 | > th | dose independent | rect. | 8 | 1 |
| 875 | 151.44 | wind | 3 | 1440 | < th | dose dependent | rect. | 8 | 3 |
| 905 | 151.50 | humidity | 70 | 30 | < th | dose independent | rect. | 16 | 4 |
| 919 | 151.52 | temperature | 25 | 30 | > th | dose dependent | rect. | 16 | 9 |
| 984 | 151.74 | wind | 3 | 4320 | < th | dose independent | rect. | 8 | 1 |
| 989 | 151.78 | humidity | 50 | 270 | > th | dose independent | sin | 19 | NA |