Os11g0480000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Disease resistance protein family protein.
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Os11g0480000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Disease resistance protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 165.68 | 0.605 | 8.07 | -2.36 | 0.583 | 2.17 | 0.17 | 0.98 | -0.858 | 20.7 | 28.2 | 5971 | -- | -- |
| 165.71 | 0.6 | 8.1 | -2.61 | 0.563 | 2.16 | 0.175 | -- | -0.92 | 20.8 | 28.5 | 5992 | -- | -- |
| 165.28 | 0.599 | 8.07 | -2.35 | 0.58 | 2.11 | -- | 0.917 | -0.849 | 20.7 | 28.35 | 5983 | -- | -- |
| 165.69 | 0.6 | 8.08 | -2.56 | 0.571 | 2.11 | -- | -- | -0.857 | 21 | 28.7 | 6003 | -- | -- |
| 177.81 | 0.621 | 8.06 | -2.26 | -- | 2.19 | -- | 1.18 | -0.891 | -- | 28.5 | 6307 | -- | -- |
| 376.5 | 0.91 | 8 | -1.81 | 0.624 | -- | 0.321 | -- | -0.485 | 20.9 | -- | -- | -- | -- |
| 376.83 | 0.909 | 8 | -1.82 | 0.625 | -- | -- | -- | -0.484 | 20.8 | -- | -- | -- | -- |
| 177.35 | 0.62 | 8.05 | -2.68 | -- | 2.63 | -- | -- | -0.758 | -- | 28.1 | 4904 | -- | -- |
| 325.82 | 0.841 | 7.97 | -- | 0.462 | 1.91 | -- | -- | -0.308 | 20.8 | 28.9 | 4810 | -- | -- |
| 399.02 | 0.933 | 7.99 | -1.83 | -- | -- | -- | -- | -0.489 | -- | -- | -- | -- | -- |
| 464.57 | 1.01 | 7.96 | -- | 0.631 | -- | -- | -- | -0.281 | 20.6 | -- | -- | -- | -- |
| 337.72 | 0.856 | 7.95 | -- | -- | 1.96 | -- | -- | -0.321 | -- | 29 | 4861 | -- | -- |
| 486.9 | 1.03 | 7.94 | -- | -- | -- | -- | -- | -0.287 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 173.38 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 8 |
| 14 | 174.86 | temperature | 20 | 4320 | > th | dose dependent | rect. | 10 | 1 |
| 16 | 175.04 | temperature | 25 | 1440 | > th | dose dependent | rect. | 24 | 14 |
| 22 | 175.24 | temperature | 25 | 1440 | > th | dose dependent | sin | 3 | NA |
| 28 | 175.39 | temperature | 25 | 1440 | > th | dose dependent | rect. | 10 | 3 |
| 69 | 176.10 | temperature | 25 | 1440 | > th | dose dependent | rect. | 24 | 19 |
| 80 | 176.31 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 13 |
| 146 | 176.91 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 253 | 177.57 | temperature | 25 | 1440 | > th | dose dependent | rect. | 17 | 21 |
| 254 | 177.58 | temperature | 20 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 278 | 177.73 | temperature | 25 | 4320 | > th | dose dependent | rect. | 19 | 21 |
| 292 | 177.80 | temperature | 30 | 4320 | < th | dose dependent | rect. | 8 | 1 |
| 300 | 177.85 | temperature | 25 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 415 | 178.12 | temperature | 25 | 4320 | > th | dose dependent | rect. | 7 | 22 |
| 437 | 178.19 | temperature | 30 | 4320 | < th | dose dependent | rect. | 7 | 3 |
| 496 | 178.31 | temperature | 25 | 4320 | > th | dose dependent | rect. | 13 | 23 |
| 516 | 178.35 | temperature | 10 | 4320 | > th | dose dependent | rect. | 7 | 15 |
| 542 | 178.41 | temperature | 25 | 4320 | > th | dose dependent | no | NA | NA |
| 822 | 179.45 | temperature | 10 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 953 | 180.00 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 3 |