Os11g0477400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Transposase (Fragment).
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Os11g0477400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Transposase (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 126.5 | 0.528 | 4.87 | 1.34 | 0.755 | 1.23 | 0.549 | 1.19 | -0.484 | 0.61 | 28.7 | 4320 | -- | -- |
| 127.07 | 0.525 | 4.85 | 1.64 | 0.748 | 1.37 | 0.613 | -- | -0.429 | 0.5 | 28.6 | 4343 | -- | -- |
| 127.72 | 0.526 | 4.87 | 1.34 | 0.749 | 1.24 | -- | 1.11 | -0.484 | 0.705 | 28.7 | 4342 | -- | -- |
| 128.08 | 0.527 | 4.84 | 1.61 | 0.746 | 1.36 | -- | -- | -0.426 | 0.727 | 28.75 | 4342 | -- | -- |
| 159.74 | 0.589 | 4.85 | 1.4 | -- | 1.18 | -- | 1.01 | -0.44 | -- | 28.3 | 4561 | -- | -- |
| 188.48 | 0.644 | 4.85 | 1.23 | 0.666 | -- | 0.406 | -- | -0.491 | 0.492 | -- | -- | -- | -- |
| 189.15 | 0.644 | 4.85 | 1.21 | 0.666 | -- | -- | -- | -0.493 | 0.65 | -- | -- | -- | -- |
| 159.81 | 0.589 | 4.83 | 1.66 | -- | 1.29 | -- | -- | -0.381 | -- | 28.4 | 4562 | -- | -- |
| 192.19 | 0.646 | 4.88 | -- | 0.838 | 1.08 | -- | -- | -0.618 | 0.771 | 29 | 4274 | -- | -- |
| 216.95 | 0.688 | 4.84 | 1.24 | -- | -- | -- | -- | -0.482 | -- | -- | -- | -- | -- |
| 227.93 | 0.706 | 4.88 | -- | 0.685 | -- | -- | -- | -0.629 | 0.734 | -- | -- | -- | -- |
| 224.95 | 0.699 | 4.86 | -- | -- | 0.938 | -- | -- | -0.597 | -- | 28.76 | 4535 | -- | -- |
| 257.29 | 0.749 | 4.87 | -- | -- | -- | -- | -- | -0.619 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 124.52 | temperature | 30 | 14400 | > th | dose independent | rect. | 14 | 21 |
| 2 | 124.52 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 21 |
| 15 | 125.05 | temperature | 25 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 16 | 125.06 | temperature | 25 | 14400 | > th | dose dependent | rect. | 18 | 5 |
| 25 | 125.19 | temperature | 30 | 14400 | > th | dose independent | rect. | 18 | 23 |
| 28 | 125.22 | temperature | 30 | 14400 | < th | dose independent | sin | 11 | NA |
| 34 | 125.25 | temperature | 30 | 14400 | > th | dose independent | sin | 11 | NA |
| 35 | 125.25 | temperature | 30 | 14400 | < th | dose independent | rect. | 18 | 23 |
| 40 | 125.33 | temperature | 30 | 14400 | > th | dose independent | rect. | 8 | 9 |
| 56 | 125.36 | temperature | 30 | 14400 | < th | dose independent | rect. | 4 | 13 |
| 57 | 125.36 | temperature | 30 | 14400 | < th | dose independent | rect. | 2 | 15 |
| 70 | 125.38 | temperature | 30 | 14400 | < th | dose independent | rect. | 8 | 9 |
| 89 | 125.42 | temperature | 30 | 14400 | > th | dose independent | no | NA | NA |
| 206 | 125.44 | temperature | 30 | 14400 | < th | dose independent | no | NA | NA |
| 233 | 125.44 | temperature | 30 | 14400 | < th | dose independent | rect. | 8 | 21 |
| 290 | 125.48 | temperature | 30 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 292 | 125.50 | temperature | 30 | 14400 | > th | dose independent | sin | 0 | NA |
| 308 | 125.54 | temperature | 30 | 14400 | < th | dose independent | sin | 0 | NA |
| 359 | 125.59 | temperature | 30 | 14400 | > th | dose independent | rect. | 14 | 5 |
| 398 | 125.65 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 5 |
| 405 | 125.65 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 9 |
| 423 | 125.66 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 13 |
| 555 | 125.91 | temperature | 25 | 14400 | > th | dose dependent | rect. | 18 | 15 |
| 578 | 125.97 | temperature | 30 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 582 | 125.99 | temperature | 30 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 589 | 126.01 | temperature | 30 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 624 | 126.07 | temperature | 30 | 14400 | > th | dose dependent | rect. | 18 | 21 |
| 655 | 126.14 | temperature | 30 | 14400 | > th | dose dependent | rect. | 8 | 7 |
| 699 | 126.17 | temperature | 30 | 14400 | > th | dose dependent | rect. | 12 | 23 |
| 710 | 126.24 | temperature | 30 | 14400 | > th | dose dependent | sin | 23 | NA |
| 732 | 126.26 | temperature | 30 | 14400 | > th | dose dependent | no | NA | NA |
| 871 | 126.32 | temperature | 30 | 14400 | > th | dose dependent | rect. | 12 | 7 |
| 977 | 126.60 | temperature | 25 | 14400 | > th | dose dependent | sin | 11 | NA |