FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0475000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.7 (0.0162) R2 : 0.377
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 5.07 (0.306) R2dE : 0.375 R2E : 0.371
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0634 (0.0341) R2dN8 : 0.00609 R2N8 : 0.0026
σ : 0.305
deviance : 42.67
__
_____
C
peak time of C : --
E
wheather : wind
threshold : 0.9369
memory length : 6
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 8.01
open length of G : 1.67

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
41.75 0.301 -2060 4900 0.0645 -950000 0.181 2260000 0.0811 18.2 0.9975 11 8.01 1.2
41.75 0.303 2.7 0.157 0.0645 5.07 0.181 -- 0.0811 18.2 0.8706 10 8.02 1.82
41.82 0.301 -2060 4900 0.0655 -950000 -- 2260000 0.0815 18.7 0.9932 11 8.01 1.41
41.82 0.303 2.7 0.155 0.0655 5.04 -- -- 0.0816 18.7 0.9369 6 8.01 1.67
42.05 0.302 -2060 4900 -- -950000 -- 2260000 0.0802 -- 0.9919 11 8.01 1.42
66.78 0.383 2.7 0.222 0.0143 -- -0.225 -- 0.0748 20.3 -- -- -- --
66.91 0.383 2.7 0.23 0.0267 -- -- -- 0.0752 16.8 -- -- -- --
42.05 0.303 2.7 0.154 -- 5.01 -- -- 0.0802 -- 0.9369 6 8.01 1.67
42.45 0.305 2.7 -- 0.0642 5.1 -- -- 0.0645 18.8 0.9349 5 8.01 1.61
66.95 0.382 2.7 0.229 -- -- -- -- 0.0745 -- -- -- -- --
68.3 0.387 2.7 -- 0.0226 -- -- -- 0.0496 17.1 -- -- -- --
42.67 0.305 2.7 -- -- 5.07 -- -- 0.0634 -- 0.9369 6 8.01 1.67
68.33 0.386 2.7 -- -- -- -- -- 0.0492 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 41.80 wind 1.0 10 < th dose independent rect. 8 1
3 41.80 wind 1.0 10 < th dose dependent rect. 8 1
6 50.43 wind 1.0 90 < th dose independent rect. 6 1
14 53.95 atmosphere 1005.0 10 > th dose dependent rect. 6 2
22 54.67 wind 1.0 270 < th dose dependent rect. 4 1
28 55.57 humidity 90.0 90 > th dose dependent rect. 6 1
29 55.61 wind 1.0 270 < th dose dependent rect. 4 3
32 55.92 wind 1.0 270 < th dose independent rect. 4 1
35 56.43 humidity 80.0 10 > th dose independent rect. 6 3
100 58.99 radiation 10.0 90 < th dose independent rect. 6 1
102 59.02 radiation 20.0 10 < th dose independent rect. 6 2
143 59.72 atmosphere 1005.0 10 > th dose independent rect. 6 2
159 59.92 radiation 10.0 10 > th dose independent rect. 13 20
165 59.96 humidity 50.0 10 < th dose dependent rect. 13 3
169 59.99 radiation 1.0 270 < th dose dependent rect. 5 1
174 60.05 humidity 50.0 10 < th dose independent rect. 13 3
295 61.07 radiation 40.0 10 < th dose dependent rect. 6 2
318 61.19 temperature 25.0 90 < th dose independent rect. 6 1
336 61.24 radiation 10.0 10 > th dose independent rect. 6 2
356 61.28 temperature 25.0 90 < th dose independent rect. 5 3
373 61.37 radiation 1.0 90 > th dose independent rect. 6 1
378 61.39 radiation 10.0 10 > th dose independent sin 12 NA
384 61.40 temperature 20.0 90 > th dose independent rect. 6 1
411 61.47 temperature 20.0 270 < th dose independent rect. 4 1
415 61.49 wind 7.0 10 > th dose independent rect. 13 3
422 61.52 radiation 1.0 90 > th dose independent rect. 5 3
433 61.52 humidity 50.0 10 > th dose independent rect. 8 22
434 61.52 temperature 30.0 90 < th dose dependent rect. 6 1
453 61.57 temperature 30.0 10 < th dose dependent rect. 6 2
477 61.61 wind 7.0 10 > th dose independent rect. 15 1
493 61.66 temperature 30.0 90 < th dose dependent rect. 5 3
503 61.70 radiation 20.0 90 < th dose independent rect. 19 13
529 61.79 wind 1.0 10 > th dose independent rect. 6 2
538 61.82 wind 5.0 10 > th dose dependent rect. 15 1
579 61.88 temperature 25.0 10 < th dose independent rect. 6 2
613 61.91 temperature 20.0 10 > th dose independent rect. 6 2
615 61.91 wind 7.0 10 < th dose independent rect. 8 22
623 61.93 humidity 50.0 90 < th dose dependent rect. 12 2
739 62.02 radiation 40.0 90 < th dose independent rect. 8 21
740 62.02 wind 5.0 270 > th dose dependent rect. 12 1
744 62.03 wind 7.0 270 > th dose independent rect. 12 1
777 62.06 temperature 10.0 90 > th dose independent rect. 5 3
780 62.06 humidity 50.0 90 > th dose independent rect. 5 3
783 62.06 atmosphere 1015.0 90 < th dose independent rect. 5 3
786 62.06 wind 9.0 90 < th dose independent rect. 8 21
787 62.06 temperature 10.0 90 > th dose independent rect. 8 21
790 62.07 precipitation 0.1 90 < th dose independent rect. 5 3
797 62.07 precipitation 0.1 90 < th dose dependent rect. 5 3
815 62.08 precipitation 0.1 10 < th dose independent rect. 6 2
817 62.08 precipitation 0.1 10 < th dose dependent rect. 6 2
836 62.13 humidity 50.0 90 > th dose dependent rect. 19 14
905 62.17 radiation 10.0 10 < th dose independent sin 12 NA
929 62.18 temperature 10.0 10 > th dose independent rect. 6 2
932 62.18 humidity 50.0 10 > th dose independent rect. 6 2
935 62.18 atmosphere 1015.0 10 < th dose independent rect. 6 2
938 62.18 temperature 10.0 10 > th dose independent rect. 8 22
939 62.18 temperature 25.0 270 < th dose dependent rect. 4 1
944 62.19 wind 5.0 10 > th dose dependent rect. 13 3