Os11g0474800 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0474800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Stemer-13-ene synthase.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	4.02	(0.0391)	R²	:	0.356
β₁	:	0.896	(0.144)	R²_dD	:	0.0578	R²_D	:	-0.0121
β₂	:	0.786	(0.1)	R²_dC	:	0.0894	R²_C	:	0.103
β₃	:	-1.28	(0.15)	R²_dE	:	0.108	R²_E	:	0.103
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	0.675	(0.0834)	R²_dN8	:	0.124	R²_N8	:	0.079
σ	:	0.731
deviance	:	246.2
__

_____

C
peak time of C	:	3.64
E
wheather	:	humidity
threshold	:	87.58
memory length	:	1652
response mode	:	< th
dose dependency	:	dose dependent
G
type of G	:	no
peak or start time of G	:	--
open length of G	:	--

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
243.36	0.733	4.03	0.794	0.904	-1.11	-0.716	-1.1	0.649	3.82	87	1545	--	--
244.96	0.729	4.02	0.882	0.791	-1.27	-0.646	--	0.678	3.67	88	1653	--	--
244.8	0.729	4.03	0.829	0.9	-1.13	--	-0.994	0.65	3.76	86	1546	--	--
246.2	0.731	4.02	0.896	0.786	-1.28	--	--	0.675	3.64	87.58	1652	--	--
273.91	0.771	4.01	0.801	--	-1.65	--	-0.315	0.753	--	94	1771	--	--
283.53	0.789	4.02	0.768	0.941	--	-0.893	--	0.676	3.79	--	--	--	--
285.88	0.792	4.01	0.781	0.935	--	--	--	0.681	3.74	--	--	--	--
273.63	0.77	4	0.861	--	-1.65	--	--	0.769	--	94.95	1770	--	--
265.26	0.759	4.03	--	0.757	-1.3	--	--	0.644	3.49	100.9	1692	--	--
334.15	0.854	4.02	0.82	--	--	--	--	0.706	--	--	--	--	--
301.95	0.813	4.03	--	0.95	--	--	--	0.595	3.74	--	--	--	--
293.18	0.797	4.02	--	--	-1.64	--	--	0.684	--	95	1779	--	--
351.87	0.876	4.04	--	--	--	--	--	0.615	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	239.40	humidity	80	1440	> th	dose independent	rect.	7	14
4	240.17	humidity	80	1440	< th	dose independent	rect.	7	14
14	241.00	humidity	70	1440	> th	dose dependent	rect.	17	3
40	242.25	humidity	80	1440	> th	dose independent	rect.	10	11
59	242.84	humidity	80	1440	> th	dose independent	sin	22	NA
62	242.95	humidity	50	1440	> th	dose dependent	rect.	7	15
76	243.16	humidity	80	1440	< th	dose independent	rect.	10	11
88	243.25	humidity	50	1440	> th	dose dependent	rect.	4	18
93	243.31	humidity	80	1440	< th	dose independent	sin	22	NA
111	243.45	humidity	90	1440	< th	dose dependent	rect.	7	14
115	243.46	humidity	90	1440	< th	dose dependent	rect.	4	17
120	243.47	humidity	90	1440	< th	dose dependent	rect.	2	19
158	243.70	humidity	50	1440	> th	dose dependent	sin	20	NA
164	243.72	humidity	80	1440	> th	dose independent	rect.	15	6
246	244.11	humidity	90	1440	< th	dose dependent	sin	19	NA
247	244.11	humidity	90	1440	< th	dose dependent	rect.	17	3
248	244.11	humidity	90	1440	< th	dose dependent	rect.	15	6
285	244.28	humidity	80	1440	< th	dose independent	rect.	16	4
352	244.52	humidity	90	1440	< th	dose dependent	rect.	11	23
357	244.53	humidity	90	1440	< th	dose dependent	rect.	15	23
412	244.71	humidity	90	1440	< th	dose dependent	no	NA	NA
509	245.01	humidity	80	1440	< th	dose independent	rect.	15	6
593	245.34	humidity	50	1440	> th	dose dependent	rect.	11	23
605	245.40	humidity	50	1440	> th	dose dependent	no	NA	NA
611	245.43	humidity	50	1440	> th	dose dependent	rect.	15	23