Os11g0474500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os11g0474500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 50.39 | 0.334 | 12.7 | -1.63 | 0.833 | 0.995 | 0.262 | -0.589 | -0.904 | 23.8 | 20.12 | 1656 | -- | -- |
| 50.66 | 0.332 | 12.6 | -1.47 | 0.839 | 0.98 | 0.264 | -- | -0.853 | 23.8 | 19.68 | 1661 | -- | -- |
| 50.68 | 0.332 | 12.7 | -1.64 | 0.831 | 0.999 | -- | -0.565 | -0.903 | 23.8 | 20.09 | 1676 | -- | -- |
| 50.94 | 0.332 | 12.6 | -1.48 | 0.833 | 0.989 | -- | -- | -0.859 | 23.8 | 19.61 | 1673 | -- | -- |
| 71.54 | 0.394 | 12.6 | -1.68 | -- | 1.42 | -- | -0.819 | -0.938 | -- | 21.05 | 926 | -- | -- |
| 77.72 | 0.413 | 12.6 | -1.1 | 0.856 | -- | 0.278 | -- | -0.632 | 23.6 | -- | -- | -- | -- |
| 78.06 | 0.414 | 12.6 | -1.12 | 0.855 | -- | -- | -- | -0.633 | 23.6 | -- | -- | -- | -- |
| 72.24 | 0.396 | 12.6 | -1.52 | -- | 1.39 | -- | -- | -0.895 | -- | 20.42 | 922 | -- | -- |
| 99.94 | 0.466 | 12.6 | -- | 0.686 | 0.635 | -- | -- | -0.606 | 23.8 | 21.9 | 932 | -- | -- |
| 123.97 | 0.52 | 12.6 | -1.09 | -- | -- | -- | -- | -0.623 | -- | -- | -- | -- | -- |
| 110.87 | 0.493 | 12.6 | -- | 0.842 | -- | -- | -- | -0.509 | 23.6 | -- | -- | -- | -- |
| 125.99 | 0.523 | 12.6 | -- | -- | 0.973 | -- | -- | -0.645 | -- | 22.17 | 904 | -- | -- |
| 155.42 | 0.582 | 12.5 | -- | -- | -- | -- | -- | -0.502 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 49.92 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 23 | 2 |
| 2 | 49.92 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 21 | 5 |
| 5 | 49.97 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 19 | 11 |
| 7 | 50.01 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 11 | 50.06 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 17 | 9 |
| 17 | 50.08 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 56 | 50.24 | temperature | 20.0 | 1440 | > th | dose dependent | sin | 14 | NA |
| 60 | 50.25 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 17 | 9 |
| 81 | 50.30 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 11 | 19 |
| 105 | 50.33 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 20 | 6 |
| 134 | 50.38 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 192 | 50.47 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 24 | 1 |
| 253 | 50.56 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 19 | 6 |
| 285 | 50.60 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 306 | 50.62 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 17 | 21 |
| 358 | 50.70 | wind | 9.0 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 419 | 50.77 | wind | 9.0 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 436 | 50.79 | temperature | 20.0 | 1440 | > th | dose dependent | no | NA | NA |
| 473 | 50.82 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 22 | 23 |
| 483 | 50.83 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 501 | 50.86 | temperature | 30.0 | 4320 | < th | dose dependent | sin | 13 | NA |
| 536 | 50.89 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 3 | 23 |
| 660 | 51.03 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 18 | 1 |
| 698 | 51.08 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 3 | 1 |
| 712 | 51.09 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 739 | 51.12 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 12 |
| 771 | 51.16 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 943 | 51.32 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 14 |