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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0474000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.03 (0.0463) R2 : 0.103
β1 : -0.537 (0.179) R2dD : 0.0208 R2D : -0.0253
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.09 (0.265) R2dE : 0.0458 R2E : -0.0363
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -13.2 (1.91) R2dD*E : 0.138 R2D*E : 0.0315
γ1 : -0.187 (0.0987) R2dN8 : 0.00958 R2N8 : 0.00628
σ : 0.859
deviance : 340.09
__
_____
C
peak time of C : --
E
wheather : wind
threshold : 1.093
memory length : 9
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 3.64
open length of G : 2.27

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
339.51 0.866 3.03 -0.534 0.0937 1.13 -0.102 -13.2 -0.183 12.7 1.1 10 3.64 2.27
374.3 0.908 3 -0.113 0.021 0.103 0.783 -- -0.207 17.6 1.1 10 3.64 2.27
339.55 0.858 3.03 -0.534 0.0937 1.13 -- -13.2 -0.183 12.7 1.1 10 3.64 2.27
371.74 0.898 2.99 -0.142 0.151 0.34 -- -- -0.217 17 2.205 19 2.85 2.25
340.09 0.859 3.03 -0.537 -- 1.09 -- -13.2 -0.187 -- 1.093 9 3.64 2.27
374.45 0.907 3 -0.109 0.00421 -- 0.761 -- -0.211 17.7 -- -- -- --
375.61 0.908 3 -0.112 0.0649 -- -- -- -0.208 12.1 -- -- -- --
372.76 0.899 3 -0.135 -- 0.3 -- -- -0.219 -- 2.131 16 2.88 2.26
371.68 0.898 3 -- 0.166 0.353 -- -- -0.206 15.3 2.3 19 2.79 2.3
375.87 0.906 3 -0.114 -- -- -- -- -0.208 -- -- -- -- --
375.94 0.907 2.99 -- 0.0664 -- -- -- -0.195 12.2 -- -- -- --
373.22 0.9 2.99 -- -- 0.324 -- -- -0.196 -- 2.4 28 2.68 2.07
376.21 0.905 2.99 -- -- -- -- -- -0.196 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 341.73 wind 1.0 10 < th dose independent rect. 3 2
3 343.59 wind 1.0 10 < th dose dependent rect. 3 1
8 344.61 precipitation 0.1 10 > th dose independent rect. 3 1
12 344.61 precipitation 0.1 10 > th dose dependent rect. 3 1
18 346.71 atmosphere 1005.0 90 < th dose dependent rect. 2 1
22 347.97 atmosphere 1005.0 10 < th dose dependent rect. 4 1
28 348.89 wind 1.0 10 < th dose independent rect. 3 6
43 352.44 wind 1.0 10 < th dose dependent rect. 3 6
48 353.22 temperature 20.0 10 > th dose independent rect. 3 1
49 353.87 humidity 80.0 1440 < th dose independent sin 9 NA
56 354.62 humidity 80.0 1440 < th dose independent rect. 19 16
57 354.66 atmosphere 1005.0 90 < th dose independent rect. 2 17
58 354.72 atmosphere 1005.0 10 < th dose dependent rect. 3 18
71 354.86 atmosphere 1005.0 90 < th dose dependent rect. 2 15
83 355.10 wind 1.0 10 < th dose independent rect. 3 10
87 355.26 humidity 80.0 1440 < th dose independent rect. 19 19
109 355.63 humidity 80.0 1440 < th dose independent rect. 21 14
119 355.86 humidity 80.0 1440 < th dose independent rect. 21 17
122 355.87 wind 1.0 10 < th dose independent rect. 3 15
145 356.04 wind 1.0 10 < th dose independent rect. 3 13
157 356.25 humidity 80.0 1440 > th dose independent sin 8 NA
165 356.43 humidity 80.0 1440 > th dose independent rect. 19 19
189 356.75 humidity 80.0 1440 > th dose independent rect. 19 17
206 356.93 humidity 80.0 1440 > th dose independent rect. 16 19
212 357.00 humidity 80.0 1440 > th dose independent rect. 4 1
221 357.08 humidity 80.0 1440 > th dose independent rect. 21 17
239 357.30 radiation 20.0 4320 > th dose independent rect. 6 1
267 357.42 atmosphere 1005.0 90 < th dose independent rect. 8 20
301 357.68 atmosphere 1005.0 270 < th dose independent rect. 23 17
319 357.80 temperature 20.0 1440 > th dose independent rect. 18 1
320 357.81 atmosphere 1005.0 90 < th dose independent rect. 9 10
347 357.94 humidity 80.0 720 > th dose independent rect. 22 12
366 358.07 wind 1.0 10 < th dose dependent rect. 3 10
368 358.09 atmosphere 1005.0 720 < th dose independent rect. 24 12
392 358.21 temperature 30.0 90 < th dose independent rect. 4 23
400 358.27 wind 1.0 10 < th dose dependent rect. 3 15
405 358.28 atmosphere 1005.0 720 < th dose independent rect. 24 4
409 358.29 atmosphere 1005.0 10 < th dose independent rect. 3 1
422 358.31 wind 1.0 10 < th dose dependent rect. 3 13
442 358.41 atmosphere 1005.0 90 < th dose dependent rect. 2 9
452 358.48 humidity 80.0 1440 > th dose independent rect. 21 23
456 358.51 atmosphere 1005.0 720 < th dose independent rect. 21 15
457 358.52 temperature 20.0 1440 < th dose independent rect. 18 1
479 358.58 humidity 80.0 1440 < th dose independent rect. 21 23
502 358.68 humidity 60.0 30 < th dose independent rect. 17 1
505 358.69 precipitation 0.1 10 > th dose independent rect. 3 5
527 358.70 humidity 80.0 1440 < th dose independent no NA NA
535 358.71 precipitation 0.1 10 > th dose dependent rect. 3 5
563 358.74 atmosphere 1005.0 90 < th dose dependent rect. 2 11
571 358.77 humidity 80.0 1440 > th dose independent no NA NA
572 358.77 humidity 80.0 720 < th dose independent rect. 24 1
578 358.77 humidity 80.0 720 < th dose dependent rect. 24 1
601 358.86 atmosphere 1005.0 10 < th dose dependent rect. 9 20
602 358.87 atmosphere 1005.0 90 < th dose independent sin 0 NA
607 358.89 humidity 80.0 1440 < th dose independent rect. 8 23
612 358.91 humidity 80.0 1440 < th dose independent rect. 1 23
626 358.95 humidity 80.0 1440 < th dose independent rect. 4 23
629 358.96 humidity 80.0 1440 > th dose independent rect. 1 23
630 358.96 humidity 60.0 10 < th dose dependent rect. 18 1
665 359.02 humidity 80.0 1440 > th dose independent rect. 4 23
670 359.04 atmosphere 1005.0 720 > th dose independent rect. 20 16
674 359.05 humidity 80.0 1440 > th dose independent rect. 7 23
679 359.07 atmosphere 1005.0 720 < th dose independent sin 8 NA
684 359.07 atmosphere 1005.0 10 < th dose dependent rect. 3 9
696 359.13 atmosphere 1005.0 90 > th dose independent sin 0 NA
753 359.28 atmosphere 1005.0 90 > th dose independent rect. 6 15
765 359.31 humidity 60.0 10 < th dose independent rect. 16 3
808 359.39 humidity 90.0 1440 < th dose dependent sin 10 NA
827 359.49 humidity 90.0 1440 < th dose dependent rect. 2 4
836 359.51 humidity 80.0 1440 < th dose dependent rect. 21 3
881 359.59 temperature 30.0 30 > th dose independent rect. 17 1
883 359.59 radiation 1.0 10 > th dose dependent rect. 18 1
909 359.63 atmosphere 1005.0 720 > th dose independent rect. 24 12
946 359.74 atmosphere 1005.0 720 > th dose independent sin 8 NA